| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF023E21 | Sequence | 653 | 013514 (4) | ref|XP_009782039.1| | 8e-54 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like isoform X2 [Nic | 146 | 015035 | ref|XP_002317204.2| | 2e-09 | hypothetical protein POPTR_0011s00530g [Populus trichocarpa] gb|EEE97816.2| hypo |
| JMSF042K01 | Sequence | 739 | 013514 (4) | ref|XP_009782039.1| | 4e-73 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like isoform X2 [Nic | 315 | 015140 | ref|XP_009609605.1| | 3e-13 | PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis] |
| JMSF048J03 | Sequence | 698 | 013514 (4) | ref|XP_006352645.1| | 1e-64 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Solanum tubero | |||||
| JMSF049H11 | Sequence | 373 | 013514 (4) | ||||||||
This contig is upended
. : . : . : . : . : . :
JMSF042K01+ TAAGTTCCCCATGAAAACC
____________________________________________________________
consensus TAAGTTCCCCATGAAAACC
. : . : . : . : . : . :
JMSF048J03+ TTCGCGCATGCAGCGGCGGTGGCGACACCGTGCTGGCCGGCG
JMSF042K01+ GTACACTCCAAGTCTAGTTTCGCGCATGCAGCGGCGGTGGCGACACCGTGCTGGCCGGCG
____________________________________________________________
consensus GTACACTCCAAGTCTAGTTTCGCGCATGCAGCGGCGGTGGCGACACCGTGCTGGCCGGCG
. : . : . : . : . : . :
JMSF048J03+ CCGGTGGCAGCCACCACGCTTTTCCGGCCCAACCGCTTCGCTAGAATTGCCTGTGCGATG
JMSF023E21+ GTGGCAGCCACCACGCTTTTCCGGCCCAACCGCTTCGCTAGAATTGCCTGTGCGATG
JMSF042K01+ CCGGTGGCAGCCACCACGCTTTTCCGGCCCAACCGCTTCGCTAGAATTGCCTGTGCGATG
____________________________________________________________
consensus CCGGTGGCAGCCACCACGCTTTTCCGGCCCAACCGCTTCGCTAGAATTGCCTGTGCGATG
. : . : . : . : . : . :
JMSF048J03+ GCGTTGTTGATCTTGTGAGCTCCGCCGTGGTTCAGATCCTCCCTCTTTAGATAAATATCC
JMSF023E21+ GCGTTGTTGATCTTGTGAGCTCCGCCGTGGTTCAGATCCTCCCTCTTTAGATAAATATCC
JMSF042K01+ GCGTTGTTGATCTTGTGAGCTCCGCCGTGGTTCAGATCCTCCCTCTTTAGATAAATATCC
____________________________________________________________
consensus GCGTTGTTGATCTTGTGAGCTCCGCCGTGGTTCAGATCCTCCCTCTTTAGATAAATATCC
. : . : . : . : . : . :
JMSF048J03+ GCTCCTTTTCCGTTGTTCTTGCTTTTGTAGTGGTCCGTAAGCCTCTGAGCTAAGTATAAT
JMSF023E21+ GCTCCTTTTCCGTTGTTCTTGCTTTTGTAGTGGTCCGTAAGCCTCTGAGCTAAGTATAAT
JMSF042K01+ GCTCCTTTTCCGTTGTTCTTGCTTTTGTAGTGGTCCGTAAGCCTCTGAGCTAAGTATAAT
____________________________________________________________
consensus GCTCCTTTTCCGTTGTTCTTGCTTTTGTAGTGGTCCGTAAGCCTCTGAGCTAAGTATAAT
. : . : . : . : . : . :
JMSF048J03+ GGAGTCTCCCTTCCCACGTAGTCCCTCAGAGCAGTTTCAACCTCTTTCTGAAAGTGGGGG
JMSF023E21+ GGAGTCTCCCTTCCCACGTAGTCCCTCAGAGCAGTTTCAACCTCTTTCTGAAAGTGGGGG
JMSF042K01+ GGAGTCTCCCTTCCCACGTAGTCCCTCAGAGCAGTTTCAACCTCTTTCTGAAAGTGGGGG
____________________________________________________________
consensus GGAGTCTCCCTTCCCACGTAGTCCCTCAGAGCAGTTTCAACCTCTTTCTGAAAGTGGGGG
. : . : . : . : . : . :
JMSF048J03+ TCTTGTAAAGCGCAGTTAAATTCATGATCCAGCTGACTCAAAGAAGCTATGAGGGTCTCC
JMSF023E21+ TCTTGTAAAGCGCAGTTAAATTCATGATCCAGCTGACTCAAAGAAGCTATGAGGGTCTCC
JMSF049H11+ CTATGAGGGTNTCC
JMSF042K01+ TCTTGTAAAGCGCAGTTAAATTCATGATCCAGCTGACTCAAAGAAGCTATGAGGGTCTCC
____________________________________________________________
consensus TCTTGTAAAGCGCAGTTAAATTCATGATCCAGCTGACTCAAAGAAGCTATGAGGGTCTCC
. : . : . : . : . : . :
JMSF048J03+ GGCACAAACTTCCCTCCATAAATCCCAAACTTTCCATCAGTACCCAAAGAAGATGGCCAG
JMSF023E21+ GGCACAAACTTCCCTCCATAAATCCCAAACTTTCCATCAGTACCCAAAGAAGATGGCCAG
JMSF049H11+ GGCACAAACTTCCCTCCATAAATCCCAAACTTTCCATCAGTACCCAAAGAAGATGGCCAG
JMSF042K01+ GGCACAAACTTCCCTCCATAAATCCCAAACTTTCCATCAGTACCCAAAGAAGATGGCCAG
____________________________________________________________
consensus GGCACAAACTTCCCTCCATAAATCCCAAACTTTCCATCAGTACCCAAAGAAGATGGCCAG
. : . : . : . : . : . :
JMSF048J03+ GCCAGCTTCTCATCATCAATCTGTTTCCAGGATAAAGTCTCCGAGGTTGTCATCAGACGA
JMSF023E21+ GCCAGCTTCTCATCATCAATCTGTTTCCAGGATAAAGTCTCCGAGGTTGTCATCAGACGA
JMSF049H11+ GCCAGCTTNTCATCATCAATCTGTTTCCAGGATAAAGTCTCNGAGGTTGTCATCAGACGA
JMSF042K01+ GCCAGCTTCTCATCATCAATCTGTTTCCAGGATAAAGTCTCCGAGGTTGTCATCAGACGA
____________________________________________________________
consensus GCCAGCTTCTCATCATCAATCTGTTTCCAGGATAAAGTCTCCGAGGTTGTCATCAGACGA
. : . : . : . : . : . :
JMSF048J03+ GCCTGGTCGAAGGAAAGTTTGTTCGGCGGCGTGGCAACACGAACACCGCCGGCGCCGGCG
JMSF023E21+ GCCTGGTCGAAGGAAAGTTTGTTCGGCGGCGTGGCAACACGAACACCGCCGGCGCCGGCG
JMSF049H11+ GCCTGGTCGAAGGAAAGTTTGTTCGGCGGNGTGGCAACACGAACACCGCCGGCGCCGGCG
JMSF042K01+ GCCTGGTCGAAGGAAAGTTTGTTCGGCGGCGTGGCAACACGAACACCGCCGGCGCCGGCG
____________________________________________________________
consensus GCCTGGTCGAAGGAAAGTTTGTTCGGCGGCGTGGCAACACGAACACCGCCGGCGCCGGCG
. : . : . : . : . : . :
JMSF048J03+ CCGGCTATGGCGTTAGTAATCTCGGTTTTACGAAGCTTTTGTTGATGATGATAATGAACT
JMSF023E21+ CCGGCTATGGCGTTAGTAATCTCGGTTTTACGAAGCTTTTGTTGATGATGATAATGAACT
JMSF049H11+ CCGGCTATGGCGTTAGTAATCTCGGTTTTACGAAGCTTTTGTTGATGATGATAATGAACT
JMSF042K01+ CCGGCTATGGCGTTAGTAATCTCGGTTTTACGAAGCTTTTGTTGATGATGATAATGAACT
____________________________________________________________
consensus CCGGCTATGGCGTTAGTAATCTCGGTTTTACGAAGCTTTTGTTGATGATGATAATGAACT
. : . : . : . : . : . :
JMSF048J03+ ACGGTACTAAGGTTTCGTGGTAGAACTGCGTTTTTAGCCAACATTGTCGCGTTTTTTTTG
JMSF023E21+ ACGGTACTAAGGTTTCGTGGTAGTACTGCGTTTTTAGCCAACATTGTCGCGTTTTTTTTG
JMSF049H11+ ACGGTACTAAGGTTTCGTGGTAGTACTGCGTTTTTAGCCAACATTGTCGCGTTTTNTTTG
JMSF042K01+ ACGGTACTAAGGTTTCGTGGTAGTACTGCGTTTTTAGCCAACATTGTCGCGTTTTTTTTG
____________________________________________________________
consensus ACGGTACTAAGGTTTCGTGGTAGTACTGCGTTTTTAGCCAACATTGTCGCGTTTTTTTTG
. : . : . : . : . : . :
JMSF048J03+ CTTGTGAGGAAAACAGCAGATTGAAGGTGATGGTTTATGGAGCGTTTGTGGTTGT
JMSF023E21+ CTTGTGAGGAAAACAGCAGATTGAAGGTGATGGTTTATGGAGCGTTTGTGGTTGT
JMSF049H11+ CTTGTGAGGAAAACAGCAGATTGAAGGTGATGGTTTATGGAGCGTTTGTGGTTGT
JMSF042K01+ CTTGTGAGGAAAACAGCAGATTGAAGGTGATGGTTTATGGAGCGTTTGTGGTTGTGGCTC
____________________________________________________________
consensus CTTGTGAGGAAAACAGCAGATTGAAGGTGATGGTTTATGGAGCGTTTGTGGTTGTGGCTC