| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN006D20 | Sequence | 625 | 013503 (3) | ref|XP_007051860.1| | 401 | DEAD-box ATP-dependent RNA helicase 8 isoform 3, partial [Theobroma cacao] gb|E | |||||
| JMSF040O15 | Sequence | 637 | 013503 (3) | ref|XP_011093152.1| | 5e-60 | PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 8-like [Ses | 735 | 007199 (2) | gb|ADV04059.1| | 5e-71 | DEAD/DEAH box helicase 8 [Hevea brasiliensis] |
| JMSF044L24 | Sequence | 748 | 013503 (3) | ref|XP_009794054.1| | 3e-124 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl | 703 | 007199 (2) | gb|ADV04059.1| | 1e-60 | DEAD/DEAH box helicase 8 [Hevea brasiliensis] |
This contig is upended
. : . : . : . : . : . :
JMFN006D20+ GCTGAAAACATCAAAATTTGACGATTGCAGGNCAAAAACCGTATTAA
____________________________________________________________
consensus GCTGAAAACATCAAAATTTGACGATTGCAGGNCAAAAACCGTATTAA
. : . : . : . : . : . :
JMFN006D20+ TTGCCCTATAGATGGTTGGAACTCTGGTGATAGAAGCTTGTCAGCCTCGTCCATAACAAG
____________________________________________________________
consensus TTGCCCTATAGATGGTTGGAACTCTGGTGATAGAAGCTTGTCAGCCTCGTCCATAACAAG
. : . : . : . : . : . :
JMFN006D20+ CATTGAACAATCTTTTAAAATGCAAACTCCTTTTCTTACAAGGTCTAGTATTCTTCCGGG
____________________________________________________________
consensus CATTGAACAATCTTTTAAAATGCAAACTCCTTTTCTTACAAGGTCTAGTATTCTTCCGGG
. : . : . : . : . : . :
JMFN006D20+ GGTTCCCACCAGCAAATGAACTGGTTGATATAGACGCATAATGTCATCTTTTAAGCTAGT
JMSF044L24+ CCCACCAGCAAATGAACTGGTTGATATAGACGCATAATGTCATCTTTTAAGCTAGT
____________________________________________________________
consensus GGTTCCCACCAGCAAATGAACTGGTTGATATAGACGCATAATGTCATCTTTTAAGCTAGT
. : . : . : . : . : . :
JMFN006D20+ TCCCCCAGTAGTAACCATGATTTCGATTTGTAAGTGCTTCCCGAGTTCTTTACAAACTTG
JMSF044L24+ TCCCCCAGTAGTAACCATGATTTCGATTTGTAAGTGCTTCCCGAGTTCTTTACAAACTTG
____________________________________________________________
consensus TCCCCCAGTAGTAACCATGATTTCGATTTGTAAGTGCTTCCCGAGTTCTTTACAAACTTG
. : . : . : . : . : . :
JMFN006D20+ TGATGTCTGCAGAGCCAATTCTCGAGTTGGGACAAGGATAATACATTGAATAGCATTTTT
JMSF044L24+ TGATGTCTGCAGAGCCAATTCTCGAGTTGGGACAAGGATAATACATTGAATAGCATTTTT
____________________________________________________________
consensus TGATGTCTGCAGAGCCAATTCTCGAGTTGGGACAAGGATAATACATTGAATAGCATTTTT
. : . : . : . : . : . :
JMFN006D20+ ATCCTGATCGATTTTTTCCAATGCAGGAATGCAGAAGGCAGCTGTTTTTCCAGTTCCATT
JMSF044L24+ ATCCTGATCGATTTTTTCCAATGCAGGAATGCAGAAGGCAGCTGTTTTTCCAGTTCCATT
____________________________________________________________
consensus ATCCTGATCGATTTTTTCCAATGCAGGAATGCAGAAGGCAGCTGTTTTTCCAGTTCCATT
. : . : . : . : . : . :
JMFN006D20+ TTTTGCTCTAGCAAGAATGTCACTTCCGGTTAGGGCAATTGGGATACTCTCCTCCTGGAT
JMSF044L24+ TTTTGCTCTAGCAAGAATGTCACTTCCGGTTAGGGCAATTGGGATACTCTCCTCCTGGAT
JMSF040O15+ TTCCGGTTAGGGCAATTGGGATACTCTCCTCCTGGAT
____________________________________________________________
consensus TTTTGCTCTAGCAAGAATGTCACTTCCGGTTAGGGCAATTGGGATACTCTCCTCCTGGAT
. : . : . : . : . : . :
JMFN006D20+ AGGGGATGGTCTCTCAAATCCCTTCTCATATATCCCCATGAGCAGTTCGCGTTTCAGAAA
JMSF044L24+ AGGGGATGGTCTCTCAAATCCCTTCTCATATATCCCCATGAGCAGTTCGCGTTTCAGAAA
JMSF040O15+ AGGGGATGGTCTCTCAAATCCCTTCTCATATATCCCCATGAGCAGTTCGCGTTTCAGAAA
____________________________________________________________
consensus AGGGGATGGTCTCTCAAATCCCTTCTCATATATCCCCATGAGCAGTTCGCGTTTCAGAAA
. : . : . : . : . : . :
JMFN006D20+ ATAGTCTTCAAATTCATTCCCCTTAGTAGCTGTCACATCCTCGGTCCTGTAGCGTGTATC
JMSF044L24+ ATAGTCTTCAAATTCATTCCCCTTAGTAGCTGTCACATCCTCGGTCCTGTAGCGTGTATC
JMSF040O15+ ATAGTCTTCAAATTCATTCCCCTTAGTAGCTGTCACATCCTCGGTCCTGTAGCGTGTATC
____________________________________________________________
consensus ATAGTCTTCAAATTCATTCCCCTTAGTAGCTGTCACATCCTCGGTCCTGTAGCGTGTATC
. : . : . : . : . : . :
JMFN006D20+ AGGTGGAGATAACTTCAATCGCGCCTTCCAATCTTGCG
JMSF044L24+ AGGTGGAGGTAACTTCAATCGCGCCTTCCAATCTTGCGAACTCGAATCAATGGCTTCAGA
JMSF040O15+ AGGTGGAGGTAACTTCAATCGCGCCTTCCAATCTTGCGAACTCGAATCAATGGCTTCAGA
____________________________________________________________
consensus AGGTGGAGGTAACTTCAATCGCGCCTTCCAATCTTGCGAACTCGAATCAATGGCTTCAGA
. : . : . : . : . : . :
JMSF044L24+ CTGTACGGTCTTTTCAACCTCATCAACGGCGGAATCAGCAGTCAACTGGTTGTTCCTTCT
JMSF040O15+ CTGTACGGTCTTTTCAACCTCATCAACGGCGGAATCAGCAGTCAACTGGTTGTTCCTTCT
____________________________________________________________
consensus CTGTACGGTCTTTTCAACCTCATCAACGGCGGAATCAGCAGTCAACTGGTTGTTCCTTCT
. : . : . : . : . : . :
JMSF044L24+ GAGCCACTGCTGG
JMSF040O15+ GAGCCACTGCTGGTTCGGTAATGGACTTCTCTGCACGTACTGGTGAGGGTTTCTCGGTTG
____________________________________________________________
consensus GAGCCACTGCTGGTTCGGTAATGGACTTCTCTGCACGTACTGGTGAGGGTTTCTCGGTTG
. : . : . : . : . : . :
JMSF040O15+ AAAAGCAGGATTGGCATTAGAGTTCAGGCCGCCATCACCTCGTCCCCCGCCGCCCATCCC
____________________________________________________________
consensus AAAAGCAGGATTGGCATTAGAGTTCAGGCCGCCATCACCTCGTCCCCCGCCGCCCATCCC
. : . : . : . : . : . :
JMSF040O15+ CGGCGGCGGATATCTTGCTCTGGAATGCATCGCTAGATTTCACTCCAAAGTCCCCGGGAA
____________________________________________________________
consensus CGGCGGCGGATATCTTGCTCTGGAATGCATCGCTAGATTTCACTCCAAAGTCCCCGGGAA
. : . : . : . : . : . :
JMSF040O15+ CCAGAGCTCCAAAAGTCAACGAATTTCAAATAAAGACAAAATCTGCGAATTTCGAATTAT
____________________________________________________________
consensus CCAGAGCTCCAAAAGTCAACGAATTTCAAATAAAGACAAAATCTGCGAATTTCGAATTAT
. : . : . : . : . : . :
JMSF040O15+ AGTTTTCCTTTCAGGGAATCTTCGATTGAAAAAATTCAAAGCTTCAGGAAAAAAAATAAA
____________________________________________________________
consensus AGTTTTCCTTTCAGGGAATCTTCGATTGAAAAAATTCAAAGCTTCAGGAAAAAAAATAAA
. : . : . : . : . : . :
JMSF040O15+ AATTATACTGATGAAGAAGAATAGAAGACGAATAAACGACCAAGCCTAGGGCGTCGAATC
____________________________________________________________
consensus AATTATACTGATGAAGAAGAATAGAAGACGAATAAACGACCAAGCCTAGGGCGTCGAATC