clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF005M16 | Sequence | 246 | 013498 (3) | 275 | 007027 (5) | ref|XP_009600347.1| | 8e-08 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 | |||
JMSF039M20 | Sequence | 581 | 013498 (3) | ref|XP_011102070.1| | 3e-65 | PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein | 872 | 007027 (5) | ref|XP_007025271.1| | 2e-126 | Leucine-rich repeat transmembrane protein kinase [Theobroma cacao] gb|EOY27893.1 |
JMSF047I19 | Sequence | 675 | 013498 (3) | ref|XP_006358134.1| | 5e-78 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 | 817 | 007027 (5) | ref|XP_004233025.1| | 4e-116 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 |
This contig is upended
. : . : . : . : . : . :
JMSF047I19+ GCTAAGCGCAGTCAAATTTGTGAGAG
____________________________________________________________
consensus GCTAAGCGCAGTCAAATTTGTGAGAG
. : . : . : . : . : . :
JMSF047I19+ CATTAAGTTCTTTNGGCAGTTCACCTGTGAGAGTATTACCACTAAGATAGAGATACTTTA
____________________________________________________________
consensus CATTAAGTTCTTTNGGCAGTTCACCTGTGAGAGTATTACCACTAAGATAGAGATACTTTA
. : . : . : . : . : . :
JMSF047I19+ AGTTGGCTAGATTCCCAAGCTCTGGTGGAACAGTTCCATTGAACATATTGTTCTCCAAGC
JMSF039M20+ CTCTGGTGGAACAGTTCCATTGAACATATTGTTCTCCAAGC
____________________________________________________________
consensus AGTTGGCTAGATTCCCAAGCTCTGGTGGAACAGTTCCATTGAACATATTGTTCTCCAAGC
. : . : . : . : . : . :
JMSF047I19+ TTAATAGTACAAGAGTTGTTATATTTCCCAAGTATTTTGGAATCGGCCCAGACAATCGAT
JMSF039M20+ TTAATAGTACAAGAGTTGTTATATTTCCCAAGTATTTTGGAATCGGCCCAGACAATCGAT
____________________________________________________________
consensus TTAATAGTACAAGAGTTGTTATATTTCCCAAGTATTTTGGAATCGGCCCAGACAATCGAT
. : . : . : . : . : . :
JMSF047I19+ TCGCATCAACATAGATATTTTCCAACTTGGTAGAAGCCCATTCAAGGGGAATTGAACCAC
JMSF039M20+ TCGCATCAACATAGATATTTTCCAACTTGGTAGAAGCCCATTCAAGGGGAATTGAACCAC
____________________________________________________________
consensus TCGCATCAACATAGATATTTTCCAACTTGGTAGAAGCCCATTCAAGGGGAATTGAACCAC
. : . : . : . : . : . :
JMSF047I19+ TTAAGTAGTTCCCGTACAGATCAATTGTCTTGAGAAAGGGTAACTTCACCAAGGAAGGAG
JMSF039M20+ TTAAGTAGTTCCCGTACAGATCAATTGTCTTGAGAAAGGGTAACTTCACCAAGGAAGGAG
____________________________________________________________
consensus TTAAGTAGTTCCCGTACAGATCAATTGTCTTGAGAAAGGGTAACTTCACCAAGGAAGGAG
. : . : . : . : . : . :
JMSF047I19+ GGAGAACACCTTGTAGATCCTGTCCATTTAAAACTATGCTTTGTACATGGCAAATACCAG
JMSF039M20+ GGAGAACACCTTGTAGATCCTGTCCATTTAAAACTATGCTTTGTACATGGCAAATACCAG
____________________________________________________________
consensus GGAGAACACCTTGTAGATCCTGTCCATTTAAAACTATGCTTTGTACATGGCAAATACCAG
. : . : . : . : . : . :
JMSF047I19+ CAGGGAAGCTACAATTGCAAGTGAGAGTATTAGTGTAGTACAGAGTCATATGTGGTGTCA
JMSF039M20+ CAGGGAAGCTACAATTGCAAGTGAGAGTATTAGTGTAGTACAGAGTCATATGTGGTGTCA
____________________________________________________________
consensus CAGGGAAGCTACAATTGCAAGTGAGAGTATTAGTGTAGTACAGAGTCATATGTGGTGTCA
. : . : . : . : . : . :
JMSF047I19+ TCCAGTTAGAGTTGTTGTCACAAGGATTTAGTGTAAAATCCCAATCCTTCTTCCCCATTT
JMSF039M20+ TCCAGTTAGAGTTGTTGTCACAAGGATTTAGTGTAAAATCCCAATCCTTCTTCCCCATTT
____________________________________________________________
consensus TCCAGTTAGAGTTGTTGTCACAAGGATTTAGTGTAAAATCCCAATCCTTCTTCCCCATTT
. : . : . : . : . : . :
JMSF047I19+ CTTCAGCTATTTCCTTAAGTGCGTTCATTTCATCTGGAGGAAGATGCCCACTCTGTGCTT
JMSF005M16+ TTTCATCTGGAGGAAGATGCCCACTCTGTGCTT
JMSF039M20+ CTTCAGCTATTTCCTTAAGTGCGTTCATTTCATCTGGAGGAAGATGCCCACTCTGTGCTT
____________________________________________________________
consensus CTTCAGCTATTTCCTTAAGTGCGTTCATTTCATCTGGAGGAAGATGCCCACTCTGTGCTT
. : . : . : . : . : . :
JMSF047I19+ CAACAAATATTGCATTGAAAGAGAGTATAATAATTGGTATGAGGATTATGAACATGGAGG
JMSF005M16+ CAACAAATATTGCATTGAAAGAGAGTATAATAATTGGTATGAGGATTATGAACATGGAGG
JMSF039M20+ CAACAAATATTGCATTGAAAGAGAGTATAATAATTGGTATGAGGATTATGAACATGGAGG
____________________________________________________________
consensus CAACAAATATTGCATTGAAAGAGAGTATAATAATTGGTATGAGGATTATGAACATGGAGG
. : . : . : . : . : . :
JMSF047I19+ CCGACATG
JMSF005M16+ CCGACATG
JMSF039M20+ CCGACATGCTTCAATTCTGGGGAAGATACAATCTTCTGCTGCAGCGCCGTTGTTCTTGCC
____________________________________________________________
consensus CCGACATGCTTCAATTCTGGGGAAGATACAATCTTCTGCTGCAGCGCCGTTGTTCTTGCC