Contig 013498:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005M16Sequence246013498 (3)275007027 (5)ref|XP_009600347.1|8e-08PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650
JMSF039M20Sequence581013498 (3)ref|XP_011102070.1|3e-65PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 872007027 (5)ref|XP_007025271.1|2e-126Leucine-rich repeat transmembrane protein kinase [Theobroma cacao] gb|EOY27893.1
JMSF047I19Sequence675013498 (3)ref|XP_006358134.1|5e-78PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650817007027 (5)ref|XP_004233025.1|4e-116PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047I19+ GCTAAGCGCAGTCAAATTTGTGAGAG
                      ____________________________________________________________
consensus GCTAAGCGCAGTCAAATTTGTGAGAG
 
. : . : . : . : . : . :
JMSF047I19+ CATTAAGTTCTTTNGGCAGTTCACCTGTGAGAGTATTACCACTAAGATAGAGATACTTTA
                      ____________________________________________________________
consensus CATTAAGTTCTTTNGGCAGTTCACCTGTGAGAGTATTACCACTAAGATAGAGATACTTTA
 
. : . : . : . : . : . :
JMSF047I19+ AGTTGGCTAGATTCCCAAGCTCTGGTGGAACAGTTCCATTGAACATATTGTTCTCCAAGC
JMSF039M20+ CTCTGGTGGAACAGTTCCATTGAACATATTGTTCTCCAAGC
                      ____________________________________________________________
consensus AGTTGGCTAGATTCCCAAGCTCTGGTGGAACAGTTCCATTGAACATATTGTTCTCCAAGC
 
. : . : . : . : . : . :
JMSF047I19+ TTAATAGTACAAGAGTTGTTATATTTCCCAAGTATTTTGGAATCGGCCCAGACAATCGAT
JMSF039M20+ TTAATAGTACAAGAGTTGTTATATTTCCCAAGTATTTTGGAATCGGCCCAGACAATCGAT
                      ____________________________________________________________
consensus TTAATAGTACAAGAGTTGTTATATTTCCCAAGTATTTTGGAATCGGCCCAGACAATCGAT
 
. : . : . : . : . : . :
JMSF047I19+ TCGCATCAACATAGATATTTTCCAACTTGGTAGAAGCCCATTCAAGGGGAATTGAACCAC
JMSF039M20+ TCGCATCAACATAGATATTTTCCAACTTGGTAGAAGCCCATTCAAGGGGAATTGAACCAC
                      ____________________________________________________________
consensus TCGCATCAACATAGATATTTTCCAACTTGGTAGAAGCCCATTCAAGGGGAATTGAACCAC
 
. : . : . : . : . : . :
JMSF047I19+ TTAAGTAGTTCCCGTACAGATCAATTGTCTTGAGAAAGGGTAACTTCACCAAGGAAGGAG
JMSF039M20+ TTAAGTAGTTCCCGTACAGATCAATTGTCTTGAGAAAGGGTAACTTCACCAAGGAAGGAG
                      ____________________________________________________________
consensus TTAAGTAGTTCCCGTACAGATCAATTGTCTTGAGAAAGGGTAACTTCACCAAGGAAGGAG
 
. : . : . : . : . : . :
JMSF047I19+ GGAGAACACCTTGTAGATCCTGTCCATTTAAAACTATGCTTTGTACATGGCAAATACCAG
JMSF039M20+ GGAGAACACCTTGTAGATCCTGTCCATTTAAAACTATGCTTTGTACATGGCAAATACCAG
                      ____________________________________________________________
consensus GGAGAACACCTTGTAGATCCTGTCCATTTAAAACTATGCTTTGTACATGGCAAATACCAG
 
. : . : . : . : . : . :
JMSF047I19+ CAGGGAAGCTACAATTGCAAGTGAGAGTATTAGTGTAGTACAGAGTCATATGTGGTGTCA
JMSF039M20+ CAGGGAAGCTACAATTGCAAGTGAGAGTATTAGTGTAGTACAGAGTCATATGTGGTGTCA
                      ____________________________________________________________
consensus CAGGGAAGCTACAATTGCAAGTGAGAGTATTAGTGTAGTACAGAGTCATATGTGGTGTCA
 
. : . : . : . : . : . :
JMSF047I19+ TCCAGTTAGAGTTGTTGTCACAAGGATTTAGTGTAAAATCCCAATCCTTCTTCCCCATTT
JMSF039M20+ TCCAGTTAGAGTTGTTGTCACAAGGATTTAGTGTAAAATCCCAATCCTTCTTCCCCATTT
                      ____________________________________________________________
consensus TCCAGTTAGAGTTGTTGTCACAAGGATTTAGTGTAAAATCCCAATCCTTCTTCCCCATTT
 
. : . : . : . : . : . :
JMSF047I19+ CTTCAGCTATTTCCTTAAGTGCGTTCATTTCATCTGGAGGAAGATGCCCACTCTGTGCTT
JMSF005M16+ TTTCATCTGGAGGAAGATGCCCACTCTGTGCTT
JMSF039M20+ CTTCAGCTATTTCCTTAAGTGCGTTCATTTCATCTGGAGGAAGATGCCCACTCTGTGCTT
                      ____________________________________________________________
consensus CTTCAGCTATTTCCTTAAGTGCGTTCATTTCATCTGGAGGAAGATGCCCACTCTGTGCTT
 
. : . : . : . : . : . :
JMSF047I19+ CAACAAATATTGCATTGAAAGAGAGTATAATAATTGGTATGAGGATTATGAACATGGAGG
JMSF005M16+ CAACAAATATTGCATTGAAAGAGAGTATAATAATTGGTATGAGGATTATGAACATGGAGG
JMSF039M20+ CAACAAATATTGCATTGAAAGAGAGTATAATAATTGGTATGAGGATTATGAACATGGAGG
                      ____________________________________________________________
consensus CAACAAATATTGCATTGAAAGAGAGTATAATAATTGGTATGAGGATTATGAACATGGAGG
 
. : . : . : . : . : . :
JMSF047I19+ CCGACATG
JMSF005M16+ CCGACATG
JMSF039M20+ CCGACATGCTTCAATTCTGGGGAAGATACAATCTTCTGCTGCAGCGCCGTTGTTCTTGCC
                      ____________________________________________________________
consensus CCGACATGCTTCAATTCTGGGGAAGATACAATCTTCTGCTGCAGCGCCGTTGTTCTTGCC