Contig 013462:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020O12Sequence685013462 (2)emb|CDP07466.1|2e-30unnamed protein product [Coffea canephora]689015023ref|XP_002274933.1|2e-19PREDICTED: probable ubiquitin-conjugating enzyme E2 16 [Vitis vinifera] emb|CBI
JMSF035P20Sequence631013462 (2)ref|XP_008344263.1|3e-35PREDICTED: zinc finger MYM-type protein 1-like [Malus domestica]694022598ref|XP_008779388.1|1e-10PREDICTED: probable ubiquitin-conjugating enzyme E2 16, partial [Phoenix dactyl

Alignment

This contig is upended


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JMSF020O12+                                            AAAGCAGACAAGACAGGCATGCTGCAC
                      ____________________________________________________________
consensus                                              AAAGCAGACAAGACAGGCATGCTGCAC
 
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JMSF020O12+           AACAACAACAAAGAAGAACATGGCTTTTGAAGCTAGGACAAGCCTTCATAAACAATCTGA
                      ____________________________________________________________
consensus             AACAACAACAAAGAAGAACATGGCTTTTGAAGCTAGGACAAGCCTTCATAAACAATCTGA
 
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JMSF020O12+           GGCAGCATGTAAGATGTTAGCAGCTAGAGTTTTTGCCATATTTGTCCCTCATATTTCCTA
                      ____________________________________________________________
consensus             GGCAGCATGTAAGATGTTAGCAGCTAGAGTTTTTGCCATATTTGTCCCTCATATTTCCTA
 
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JMSF020O12+           CGTTGATAGTTTAACTCACAATTTAAAATTTTCCTAGTGGAGAACTGATTCCAAAATTTC
JMSF035P20+                                        TTTCCTAGTGGAGAACTGATTCCAAAATTTC
                      ____________________________________________________________
consensus             CGTTGATAGTTTAACTCACAATTTAAAATTTTCCTAGTGGAGAACTGATTCCAAAATTTC
 
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JMSF020O12+           CCATAGTCCTCTGTCACTCATGACAGCAAAGGCCAACAGAAAGCCACAACACACATCCAT
JMSF035P20+           CCATAGTCCTCTGTCACTCATGACAGCAAAGGCCAACAGAAAGCCACAACACACATCCAT
                      ____________________________________________________________
consensus             CCATAGTCCTCTGTCACTCATGACAGCAAAGGCCAACAGAAAGCCACAACACACATCCAT
 
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JMSF020O12+           CACATGTGGATATTAGTTAAAATGTAAAAATTACCATTCCAATTGATCGGCCCCAATAGT
JMSF035P20+           CACATGTGGATATTAGTTAAAATGTAAAAATTACCATTCCAATTGATCGGCCCCAATAGT
                      ____________________________________________________________
consensus             CACATGTGGATATTAGTTAAAATGTAAAAATTACCATTCCAATTGATCGGCCCCAATAGT
 
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JMSF020O12+           TCCAAAAGTTCCCAGTATAGGTCCCCATTGTTCCCAAAGTTTCCCCAGTCAGTCAACTTT
JMSF035P20+           TCCAAAAGTTCCCAGTATAGGTCCCCATTGTTCCCAAAGTTTCCCCAGTCAGTCAACTTT
                      ____________________________________________________________
consensus             TCCAAAAGTTCCCAGTATAGGTCCCCATTGTTCCCAAAGTTTCCCCAGTCAGTCAACTTT
 
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JMSF020O12+           CCCAAAGTTCAAGTCTTTATATGCAGATAGTCAGATACCTAACAGTCCACAAACCTGTTC
JMSF035P20+           CCCAAAGTTCAAGTCTTTATATGCAGATAGTCAGATACCTAACAGTCCACAAACCTGTTC
                      ____________________________________________________________
consensus             CCCAAAGTTCAAGTCTTTATATGCAGATAGTCAGATACCTAACAGTCCACAAACCTGTTC
 
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JMSF020O12+           CGTGCATGTGTATATACAAAGATTTACCTAAACAAATATGGCCATTGCTGTAGATATGTG
JMSF035P20+           CGTGCATGTGTATATACAAAGATTTACCTAAACAAATATGGCCATTGCTGTAGATATGTG
                      ____________________________________________________________
consensus             CGTGCATGTGTATATACAAAGATTTACCTAAACAAATATGGCCATTGCTGTAGATATGTG
 
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JMSF020O12+           GGTGCAGTGGAGCTGGAGACAAAAATATCACCTGAGGAGCTTCCATAGGGTAATGCTCAG
JMSF035P20+           GGTGCAGTGGAGCTGGAGACAAAAATATCACCTGAGGAGCTTCCATAGGGTAATGCTCAG
                      ____________________________________________________________
consensus             GGTGCAGTGGAGCTGGAGACAAAAATATCACCTGAGGAGCTTCCATAGGGTAATGCTCAG
 
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JMSF020O12+           GAAAATCTACTTGAAGCTGATACGTCTCATTGGCATACAGAGTACCAGGAGCTCCATTCA
JMSF035P20+           GAAAATCTACTTGAAGCTGATACGTCTCATTGGCATACAGAGTACCAGGAGCTCCATTCA
                      ____________________________________________________________
consensus             GAAAATCTACTTGAAGCTGATACGTCTCATTGGCATACAGAGTACCAGGAGCTCCATTCA
 
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JMSF020O12+           CTTCAACCACCCACCT                                            
JMSF035P20+           CTTCAACCACCCACCTGAGGGTGGATTGACCTGCCACTCCGCCAGCTCTTTCTGGAGTCT
                      ____________________________________________________________
consensus             CTTCAACCACCCACCTGAGGGTGGATTGACCTGCCACTCCGCCAGCTCTTTCTGGAGTCT
 
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JMSF035P20+           GTTAGAAGCTATCTTGCTCAAGGTCTTGCGCGAGGAAGTGGCGGAGCTGGTCATGGCTGG
                      ____________________________________________________________
consensus             GTTAGAAGCTATCTTGCTCAAGGTCTTGCGCGAGGAAGTGGCGGAGCTGGTCATGGCTGG
 
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JMSF035P20+           GGGCGCCGTGTTGACGACGACGACGTCGTTGATGAAGCAGAAAGGTGGAAGAGAAATACC
                      ____________________________________________________________
consensus             GGGCGCCGTGTTGACGACGACGACGTCGTTGATGAAGCAGAAAGGTGGAAGAGAAATACC