Contig 013458:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I24-            ACAAAATCATGTCAAAAGCTCAAATATAGCATTAGTTCTTCCCCCTAAACTTAGCAGA
                      ____________________________________________________________
consensus               ACAAAATCATGTCAAAAGCTCAAATATAGCATTAGTTCTTCCCCCTAAACTTAGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I24-          AACTAGTACACCACAATATTTCTAAAAGCCTTCCAGAAGATCGAGGTTTAGCTTGTGATG
                      ____________________________________________________________
consensus             AACTAGTACACCACAATATTTCTAAAAGCCTTCCAGAAGATCGAGGTTTAGCTTGTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I24-          GTGGACACATTCTTGATAAGTGCCTCAATGATAATACAATCGCCAACTAGGAAGCCATTC
                      ____________________________________________________________
consensus             GTGGACACATTCTTGATAAGTGCCTCAATGATAATACAATCGCCAACTAGGAAGCCATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I24-          GATGAATCCCGGAGTTCAGTTAGCGACATAAAAACAGAACTGCCCCAGCCTAAAGATCCA
                      ____________________________________________________________
consensus             GATGAATCCCGGAGTTCAGTTAGCGACATAAAAACAGAACTGCCCCAGCCTAAAGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I24-          GGAGCAAAGCATCTACAAACTACAATTTTAAACATACATATATGATTGAAGAGAAATCAT
                      ____________________________________________________________
consensus             GGAGCAAAGCATCTACAAACTACAATTTTAAACATACATATATGATTGAAGAGAAATCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I24-          TCATAAATTAACAAATAATTAGAATGGCACACATACACTACTTCACATACGTTGCATCTC
                      ____________________________________________________________
consensus             TCATAAATTAACAAATAATTAGAATGGCACACATACACTACTTCACATACGTTGCATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024I24-          TTTATGTTTTCCAGACTTCTGATTTCTCATGCGTAGCAAGAAATATACCAACAGTCGAGA
                      ____________________________________________________________
consensus             TTTATGTTTTCCAGACTTCTGATTTCTCATGCGTAGCAAGAAATATACCAACAGTCGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025I24-                                                            AGGATTTGCT
rJMSF024I24-          ACAGGTATTTTGTGGATCCAGCATCAGATACACAGCAAGGTTTTCCCCATAGGATTTGCT
                      ____________________________________________________________
consensus             ACAGGTATTTTGTGGATCCAGCATCAGATACACAGCAAGGTTTTCCCCATAGGATTTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025I24-          ATCTCCNAGGGAGNCCAGTCTCAACTTCCATATGAGGGAGCCTGCAGTAAATTTATCGGA
rJMSF024I24-          ATCTCCAAGGGAGTCCAGTCTCAACTTCCATATGAGGGAGCCTGCAGTAAATTTATCGGA
JMSF024I24+                              CTCAACTTCCATATGAGGGAGCCTGCAGTAAATTTATCGGA
JMSF035N10+                                                   CCTGCAGTAAATTTATCGGA
                      ____________________________________________________________
consensus             ATCTCCAAGGGAGTCCAGTCTCAACTTCCATATGAGGGAGCCTGCAGTAAATTTATCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025I24-          GTAACGAGTTTGACTGTTTAATTTACTGTACTCAGATACTTTCCAAGTGAAGGTTTTATC
rJMSF024I24-          ATAACGAGTTTGACTGTTTAATTTACTGTACTCAGATACTTTCCAAGTGAAGGTTTTATC
JMSF024I24+           ATAACGAGTTTGACTGTTTAATTTACTGTACTCAGATACTTTCCAAGTGAAGGTTTTATC
JMSF035N10+           ATAACGAGTTTGACTGTTTAATTTACTGTACTCAGATACTTTCCAAGTGAAGGTTTTATC
                      ____________________________________________________________
consensus             ATAACGAGTTTGACTGTTTAATTTACTGTACTCAGATACTTTCCAAGTGAAGGTTTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025I24-          AACTTTCAAGGCTGGCTTCNAATATTCTCTGGTAAACTTAGAATCAAGCACGAAAACCTC
rJMSF024I24-          AACTTTCAAGGCTGGCTTCAAATATTCTCTGGTAAACTTAGAATCAAGCACGAAAACCTC
JMSF024I24+           AACTTTCAAGGCTGGCTTCAAATATTCTCTGGTAAACTTAGAATCAAGCACGAAAACCTC
JMSF035N10+           AACTTTCAAGGCTGGCTTCAAATATTCTCTGGTAAACTTAGAATCAAGCACGAAAACCTC
                      ____________________________________________________________
consensus             AACTTTCAAGGCTGGCTTCAAATATTCTCTGGTAAACTTAGAATCAAGCACGAAAACCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025I24-          AACTCCAAACACGCATTTGTTATTAACNNGATAACCGTTTGCTGC-TCATCNAACACATC
rJMSF024I24-          AACTCCAAACACGCATTTGTTATTAACAAGATAACCGTTTGCTGCATCATCAAACACATC
JMSF024I24+           AACTCCAAACACGCATTTGTTATTAACAAGATAACCGTTTGCTGCATCATCAAACACATC
JMSF035N10+           AACTCCAAACACGCATTTGTTATTAACAAGATAACCGTTTGCTGCATCATCAAACACATC
                      ____________________________________________________________
consensus             AACTCCAAACACGCATTTGTTATTAACAAGATAACCGTTTGCTGCATCATCAAACACATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025I24-          ACGAGGGACCA                                                 
rJMSF024I24-          ACGAGGGACCAATTTCGTGATGCCACACTCTGGTT                         
JMSF024I24+           ACGAGGGACCAATTTCGTGATGCCACACTCTGGTTTCAATCTATGAAACCTGTTAACTAC
JMSF035N10+           ACGAGGGACCAATTTCGTGATGCCACACTCTGGTTTCAATCTATGAAACCTGTTAACTAC
                      ____________________________________________________________
consensus             ACGAGGGACCAATTTCGTGATGCCACACTCTGGTTTCAATCTATGAAACCTGTTAACTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024I24+           ACCACCTTGAAAGATTGAGTATTTGTCACGCTTATGATCAAATATTAAAAACTTCAAATC
JMSF035N10+           ACCACCTTGAAAGATTGAGTATTTGTCACGCTTATGATCAAATATTAAAAACTTCAAATC
                      ____________________________________________________________
consensus             ACCACCTTGAAAGATTGAGTATTTGTCACGCTTATGATCAAATATTAAAAACTTCAAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024I24+           TGTGTATATCTCCCAACTCAAAGGCAATGCATCTGTGTCTTCAATACACAGGAAAACAGA
JMSF035N10+           TGTGTATATCTCCCAACTCAAAGGCAATGCATCTGTGTCTTCAATACACAGGAAAACAGA
                      ____________________________________________________________
consensus             TGTGTATATCTCCCAACTCAAAGGCAATGCATCTGTGTCTTCAATACACAGGAAAACAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024I24+           GATGTGTCCCTTGCCATCACCCTCACCATTGGGATATAAAGAGAATGTCCATTTGTAACC
JMSF035N10+           GATGTGTCCCTTGCCATCACCCTCACCATTGGGATATAAAGAGAATGTCCATTTGTAACC
                      ____________________________________________________________
consensus             GATGTGTCCCTTGCCATCACCCTCACCATTGGGATATAAAGAGAATGTCCATTTGTAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024I24+           ACTAGCTTCAAAGATTTTGGACTTGAAAAACTGGGTTCCATTGTCTGTCAGCATCTTAGT
JMSF035N10+           ACTAGCTTCAAAGATTTTGGACTTGAAAAACTGGGTTCCATTGTCTGTCAGCATCTTAGT
                      ____________________________________________________________
consensus             ACTAGCTTCAAAGATTTTGGACTTGAAAAACTGGGTTCCATTGTCTGTCAGCATCTTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024I24+           AAAACCGGAGAATGATTCAATCTCCAACATGTAATGGGACGGTGCTATATCTCTTGCCCA
JMSF035N10+           AAAACCGGAGAATGATTCAATCTCCAACATGTAATGGGACGGTGCTATATCTCTTGCCCA
                      ____________________________________________________________
consensus             AAAACCGGAGAATGATTCAATCTCCAACATGTAATGGGACGGTGCTATATCTCTTGCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024I24+           GCTAACTGCATTTGAAACGTTGATTGACATTATTGCTCTTCCAACTTTTTTCAAAGAAGA
JMSF035N10+           GCTAACTGCATTTGAAACGTTGATTGACATTATTGCTCTTCCAACTTTTTTCAAAGAAGA
                      ____________________________________________________________
consensus             GCTAACTGCATTTGAAACGTTGATTGACATTATTGCTCTTCCAACTTTTTTCAAAGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024I24+           AAGAAGAGGGCAAGAGGAACTCTCTTGAAACCC                           
JMSF035N10+           AAGAAGAGGGCAAGAGGAACTCTCTTGAAACCCAGTGCTCGGATTTTTAAACTGAATACC
                      ____________________________________________________________
consensus             AAGAAGAGGGCAAGAGGAACTCTCTTGAAACCCAGTGCTCGGATTTTTAAACTGAATACC