Contig 013409:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037O05Sequence592013409 (4)gb|EEC74994.1|3e-85hypothetical protein OsI_11052 [Oryza sativa Indica Group]719013409 (4)ref|XP_002312053.2|6e-77hypothetical protein POPTR_0008s04660g [Populus trichocarpa] gb|EEE89420.2| hypo
JMSF029K10Sequence672013409 (4)ref|XP_010920978.1|6e-74PREDICTED: protein IN2-1 homolog B-like [Elaeis guineensis]747013409 (4)ref|XP_011077023.1|4e-57PREDICTED: protein IN2-1 homolog B-like [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF029K10- AATCTCAGATTTTCAGGACAGGGTCAAACAATCCATTACATTATTGAGAA
rJMFF037O05- AGAA
                      ____________________________________________________________
consensus AATCTCAGATTTTCAGGACAGGGTCAAACAATCCATTACATTATTGAGAA
 
. : . : . : . : . : . :
rJMSF029K10- ACCCAGTGGAACCAACTAGCCAAGTCATTTATACAA-ACACCTTATTCATAGTTTAACTC
rJMFF037O05- ACCCAGNGGAACCAACTAGCCAAGTCATTTATACAANGCACCTTATTCATAGTTTAACTC
                      ____________________________________________________________
consensus ACCCAGTGGAACCAACTAGCCAAGTCATTTATACAANGCACCTTATTCATAGTTTAACTC
 
. : . : . : . : . : . :
rJMSF029K10- AATAAAAGTAGTTTAACAATGGCCATGGGAGCATGATTATTGATATTGTAGCAGCCATCT
rJMFF037O05- AGTAAAAGTAGTTTAACAATGGCCATGGGAGCATGATTATTGATATTGTAGCAGCCATCT
                      ____________________________________________________________
consensus AGTAAAAGTAGTTTAACAATGGCCATGGGAGCATGATTATTGATATTGTAGCAGCCATCT
 
. : . : . : . : . : . :
rJMSF029K10- TTTAAAGAGTTCAGGGCTTAGCTGCAGCCTGAAATTTTTTCATAAAGCTTTCAACGTGCT
rJMFF037O05- TTTAAAGAGTTCAGGGCTTANCTGCANCCTGAAATTTTTTCATAAAGCTTTCAACGTGCT
                      ____________________________________________________________
consensus TTTAAAGAGTTCAGGGCTTAGCTGCAGCCTGAAATTTTTTCATAAAGCTTTCAACGTGCT
 
. : . : . : . : . : . :
rJMSF029K10- CCTTGGGGTCGCGTTTTGTTACTTTGTAAGCATCAATCTTGTTCACCTCCTCGATCCAGT
rJMFF037O05- CCTTGGGGTCGCGTTTTGTTACTTTGTAAGCATCAATCTTGTTCACCTCCTCNATCCAGT
JMSF029K10+ TCCTCGATCCAGT
                      ____________________________________________________________
consensus CCTTGGGGTCGCGTTTTGTTACTTTGTAAGCATCAATCTTGTTCACCTCCTCGATCCAGT
 
. : . : . : . : . : . :
rJMSF029K10- GTGCAAGTTTCGGCCTGCCCTGTGTTATATCATAGTTCTTGAATTCATTGAAGAAAGTCT
rJMFF037O05- GTGCAAGTTTCGGCCTGCCCTGTGTTATATCATAGTTCTTGAATTCATTGAAGAAAGTCT
JMSF029K10+ GTGCAAGTTTCGGCCTGCCCTGTGTTATATCATAGTTCTTGAATTCATTGAAGAAAGTCT
                      ____________________________________________________________
consensus GTGCAAGTTTCGGCCTGCCCTGTGTTATATCATAGTTCTTGAATTCATTGAAGAAAGTCT
 
. : . : . : . : . : . :
rJMSF029K10- GGAACCTCTCGATAAATGGTATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
rJMFF037O05- GGAACCTCTCGATAAATGGNATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
JMFF037O05+ CTCGATAAATGGTATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
JMSF029K10+ GGAACCTCTCGATAAATGGTATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
                      ____________________________________________________________
consensus GGAACCTCTCGATAAATGGTATAAAAGCTATATCCACTGCACTGAATTGGCCGAGGAAGA
 
. : . : . : . : . : . :
rJMSF029K10- AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
rJMFF037O05- AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
JMFF037O05+ AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
JMSF029K10+ AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
                      ____________________________________________________________
consensus AAGGTCCATCTTCAAACTTGGAAAGATAATTCTCGAGGGCATCGAACCCAGCAACAGCAG
 
. : . : . : . : . : . :
rJMSF029K10- CATCACTCATTCCTTCTGACCTCAAAGTACCAAACATAGTTTTGATAAAGGAGTCAGAGA
rJMFF037O05- CATCACTCNTTCCTTCTGACCTCAAAGTACCANACATAGTTTTGATAAAGGAGTCANAGA
JMFF037O05+ CATCACTCATTCCTTCTGACCTCAAAGTACCAAACATAGTTTTGATAAAGGAGTCAGAGA
JMSF029K10+ CATCACTCATTCCTTCTGACCTCAAAGTACCAAACATAGTTTTGATAAAGGAGTCAGAGA
                      ____________________________________________________________
consensus CATCACTCATTCCTTCTGACCTCAAAGTACCAAACATAGTTTTGATAAAGGAGTCAGAGA
 
. : . : . : . : . : . :
rJMSF029K10- AGGACAGTAACTCATCTGC-AATGTTTTCTTAGCGGGATCATCAGGATAAAGTGAAGGCC
rJMFF037O05- AGGACAGTAACTCATCTGCAAATGTTTTCTTANCGGGATCATCANGATAAAGTGAANGCC
JMFF037O05+ AGGACAGTAACTCATCTGCAAATGTTTTCTTAGCGGGATCATCAGGATAAAGTGAAGGCC
JMSF029K10+ AGGACAGTAACTCATCTGC-AATGTTTTCTTAGCGGGATCATCAGGATAAAGTGAAGGCC
                      ____________________________________________________________
consensus AGGACAGTAACTCATCTGCAAATGTTTTCTTAGCGGGATCATCAGGATAAAGTGAAGGCC
 
. : . : . : . : . : . :
rJMSF029K10- CTTCAAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
rJMFF037O05- CTTCNAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
JMFF037O05+ CTTCAAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
JMSF029K10+ CTTCAAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
                      ____________________________________________________________
consensus CTTCAAAGTTGTCACTGAAGAACTTGACCAAGTCAAGACTCTCTCCCTTAATTTCATTAT
 
. : . : . : . : . : . :
rJMSF029K10- TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
rJMFF037O05- TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
JMFF037O05+ TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
JMSF029K10+ TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
                      ____________________________________________________________
consensus TGTATTCCAGAGCTGGAACCTTATTTTCAGGGTAAACCTTCTCCTTGTACCAAGCTGGCC
 
. : . : . : . : . : . :
rJMSF029K10- TGTCATTCAACTCAATTGCANCCAATTTCACTTTATCCT
rJMFF037O05- TGTCATTCAACTCAATTGCAACCAATTTCACTTTATCCTGCAATCCCTTATAATT
JMFF037O05+ TGTCATTCAACTCAATTGCAACCAATTTCACTTTATCCTGCAATCCCTTATAATTTCGGG
JMSF029K10+ TGTCATTCAACTCAATTGCAACCAATTTCACTTTATCCTGCAATCCCTTATAATTTCGGG
                      ____________________________________________________________
consensus TGTCATTCAACTCAATTGCAACCAATTTCACTTTATCCTGCAATCCCTTATAATTTCGGG
 
. : . : . : . : . : . :
JMFF037O05+ CAATCCAGGCACGTTGAGCATATGGGCATATGTATGCTATATACAGCTTGGGAGTTCCAT
JMSF029K10+ CAATCCAGGCACGTTGAGCATATGGGCATATGTATGCTATATACAGCTTGGGAGTTCCAT
                      ____________________________________________________________
consensus CAATCCAGGCACGTTGAGCATATGGGCATATGTATGCTATATACAGCTTGGGAGTTCCAT
 
. : . : . : . : . : . :
JMFF037O05+ CAAAGATAGGTGGTGGTTCNGAAGAAGCACCAAGAGTAGGGGGAAGCACCTCANTGGTAG
JMSF029K10+ CAAAGATAGGTGGTGGTTCTGAAGAAGCACCAAGAGTAGGGGGAAGCACCTCACTGGTAG
                      ____________________________________________________________
consensus CAAAGATAGGTGGTGGTTCTGAAGAAGCACCAAGAGTAGGGGGAAGCACCTCACTGGTAG
 
. : . : . : . : . : . :
JMFF037O05+ CCATTGTTGAAGCTGGTTNGGAATCNGGAGAGNGTCACCGGNGAAGNACTGAAGATGA
JMSF029K10+ CCATTGTTGAAGCTGGTTTGGAATCTGGAGAGTGTCACCGGTGAAGAACTGAAGATGAGC
                      ____________________________________________________________
consensus CCATTGTTGAAGCTGGTTTGGAATCTGGAGAGTGTCACCGGTGAAGAACTGAAGATGAGC