| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012D14 | Sequence | 452 | 000054 (2) | ref|XP_011076578.1| | 107 | PREDICTED: transcription elongation factor S-II [Sesamum indicum] | 804 | 013383 (4) | ref|XP_009620752.1| | 5e-106 | PREDICTED: transcription elongation factor S-II-like [Nicotiana tomentosiformis |
| JMFF018J21 | Sequence | 551 | 000054 (2) | ref|XP_009624142.1| | 2e-29 | PREDICTED: transcription elongation factor S-II-like [Nicotiana tomentosiformis | 838 | 013383 (4) | ref|XP_009620752.1| | 2e-106 | PREDICTED: transcription elongation factor S-II-like [Nicotiana tomentosiformis |
| JMSF026E09 | Sequence | 364 | 013383 (4) | ref|XP_002504680.1| | 2e-20 | predicted protein, partial [Micromonas sp. RCC299] gb|ACO65938.1| predicted prot | 315 | 013383 (4) | ref|XP_002504680.1| | 1e-20 | predicted protein, partial [Micromonas sp. RCC299] gb|ACO65938.1| predicted prot |
This contig is upended
. : . : . : . : . : . :
rJMFF012D14+ AGAGTA
rJMFF018J21+ GGAAAGAGTA
____________________________________________________________
consensus GGAAAGAGTA
. : . : . : . : . : . :
rJMFF012D14+ GTGCCAGTGCACATGTGAGGGTTGAGAAGACANCCAATGCAGGAAAATCAAGTTCCTTTG
rJMFF018J21+ GTGCCAGTGCACATGTGAGGGTTGAGAAGACANCCAATGCAGGAAAATCAAGTTCCTTTG
____________________________________________________________
consensus GTGCCAGTGCACATGTGAGGGTTGAGAAGACANCCAATGCAGGAAAATCAAGTTCCTTTG
. : . : . : . : . : . :
rJMFF012D14+ GCGCAAATCCTGCTCCACCAAAGCTTAATGCCCTTATTTATTGCAAGGATGCAGATAGGG
rJMFF018J21+ GCGCAAATCCTGCTCCACCAAAGCTTAATGCCCTTATTTATTGCAAGGATGCAGATAGGG
____________________________________________________________
consensus GCGCAAATCCTGCTCCACCAAAGCTTAATGCCCTTATTTATTGCAAGGATGCAGATAGGG
. : . : . : . : . : . :
rJMFF012D14+ ATAAGATCCGGGAACTCATCGCACAGGCTTTGTGCAAAGTTATTGATGAGGTTGATGATG
rJMFF018J21+ ATAAGATCCGGGAACTCATCGCACAGGCTTTGTGCAAAGTTATTGATGAGGTTGATGATG
____________________________________________________________
consensus ATAAGATCCGGGAACTCATCGCACAGGCTTTGTGCAAAGTTATTGATGAGGTTGATGATG
. : . : . : . : . : . :
rJMFF012D14+ ATCTAAAAGCTGATGTAAATGCATGCGATCCTAATAGAATTGCTGTTCAGGTGGAGACTG
rJMFF018J21+ ATCTAAAAGCTGATGTAAATGCATGCGATCCTAATAGAATTGCTGTTCAGGTGGAGACTG
____________________________________________________________
consensus ATCTAAAAGCTGATGTAAATGCATGCGATCCTAATAGAATTGCTGTTCAGGTGGAGACTG
. : . : . : . : . : . :
rJMFF012D14+ CTTTGTATGAGAAATGGGGCGGTTCTAAAGGTGCTCAGAAGTTCAAGTATAGATCAATAA
rJMFF018J21+ CTTTGTATGAGAAATGGGGCGGTTCTAAAGGTGCTCAGAAGTTCAAGTATAGATCAATAA
____________________________________________________________
consensus CTTTGTATGAGAAATGGGGCGGTTCTAAAGGTGCTCAGAAGTTCAAGTATAGATCAATAA
. : . : . : . : . : . :
rJMFF012D14+ TGTTCAATATCAAGGATGGAAACAACCCAGATTTCCGACGAAAAGTCCTCCTAGGTGAAT
rJMFF018J21+ TGTTCAATATCAAGGATGGAAACAACCCAGATTTCCGACGAAAAGTCCTCCTAGGTGAAT
____________________________________________________________
consensus TGTTCAATATCAAGGATGGAAACAACCCAGATTTCCGACGAAAAGTCCTCCTAGGTGAAT
. : . : . : . : . : . :
rJMFF012D14+ TCTCACCCCAATCTGTTCCCGAATTGACCCCAGAAGACATGGCAAGCGACGAAAGGCAAA
rJMFF018J21+ TCTCACCCCAATCTGTTCCCGAATTGACCCCAGAAGACATGGCAAGCGACGAAAGGCAAA
____________________________________________________________
consensus TCTCACCCCAATCTGTTCCCGAATTGACCCCAGAAGACATGGCAAGCGACGAAAGGCAAA
. : . : . : . : . : . :
rJMFF012D14+ AGGAAAACGAGAAAATCAAGGAAAAGGCATTGTTTAATAGTGAGCGCGGTGGTCGGGGTG
rJMSF026E09+ GGTG
rJMFF018J21+ AGGAAAACGAGAAAATCAAGGAAAAGGCATTGTTTAATAGTGAGCGCGGTGGTCGGGGTG
JMSF026E09- GGTG
____________________________________________________________
consensus AGGAAAACGAGAAAATCAAGGAAAAGGCATTGTTTAATAGTGAGCGCGGTGGTCGGGGTG
. : . : . : . : . : . :
rJMFF012D14+ TGGCCAGTACCAATGCTTTCAAGTGTAAAAAATGTGGGAAGAAGGAATGCACCTATTACC
rJMSF026E09+ TGGCCAGTACCAATGCTTTCAAGTGTAAAAAATGTGGGAAGAAGGAATGCACCTATTACC
rJMFF018J21+ TGGCCAGTACCAATGCTTTCAAGTGTAAAAAATGTGGGAAGAAGGAATGCACCTATTACC
JMSF026E09- TGGCCAGTACCAATGCTTTCAAGTGTAAAAAATGTGGGAAGAAGGAATGCACCTATTACC
____________________________________________________________
consensus TGGCCAGTACCAATGCTTTCAAGTGTAAAAAATGTGGGAAGAAGGAATGCACCTATTACC
. : . : . : . : . : . :
rJMFF012D14+ AGTTGCAGACTCGCAGTGCTGATGAACCAATGACGACTTTCGTCACCTGTGTGAACTGCG
rJMSF026E09+ AGTTGCAGACTCGCAGTGCTGATGAACCAATGACGACTTTCGTCACCTGTGTGAACTGCG
rJMFF018J21+ AGTTGCAGACTCGCAGTGCTGATGAACCAATGACGACTTTCGTCACCTGTGTGAACTGCG
JMSF026E09- AGTTGCAGACTCGCAGTGCTGATGAACCAATGACGACTTTCGTCACCTGTGTGAACTGCG
____________________________________________________________
consensus AGTTGCAGACTCGCAGTGCTGATGAACCAATGACGACTTTCGTCACCTGTGTGAACTGCG
. : . : . : . : . : . :
rJMFF012D14+ ACAATAGGTGGAGATTTTAGCTGTGTGGTGTAGTTGGGAGCCATTTGTGACTTATTTGTG
rJMSF026E09+ ACAATAGGTGGAGATTTTAGCTGTGTGGTGTAGTTGGGAGCCATTTGTGACTTATTTGTG
rJMFF018J21+ ACAATAGGTGGAGATTTTAGCTGTGTGGTGTAGTTGGGAGCCATTTGTGACTTATTTGTG
JMSF026E09- ACAATAGGTGGAGATTTTAGCTGTGTGGTGTAGTTGGGAGCCATTTGTGACTTATTTGTG
____________________________________________________________
consensus ACAATAGGTGGAGATTTTAGCTGTGTGGTGTAGTTGGGAGCCATTTGTGACTTATTTGTG
. : . : . : . : . : . :
rJMFF012D14+ TTACATGATGAGCTCAATAGGTGCCCTTTCTTAATGACTTAGCTTTAGTTTTAATCTTTT
rJMSF026E09+ TTACATGATGAGCTCAATAGGTGCCCTTTCTTAATGACTTAGCTTTAGTTTTAATCTTTT
rJMFF018J21+ TTACATGATGAGCTCAATAGGTGCCCTTTCTTAATGACTTAGCTTTAGTTTTAATCTTTT
JMSF026E09- TTACATGATGAGCTCAATAGGTGCCCTTTCTTAATGACTTAGCTTTAGTTTTAATCTTTT
____________________________________________________________
consensus TTACATGATGAGCTCAATAGGTGCCCTTTCTTAATGACTTAGCTTTAGTTTTAATCTTTT
. : . : . : . : . : . :
rJMFF012D14+ TTTCATTGGAAATGTTTCTTGTATGCCTTCATACCTTGTTGGAGTTTATTATTTGTTGTA
rJMSF026E09+ TTTCATTGGAAATGTTTCTTGTATGCCTTCATACCTTGTTGGAGTTTATTATTTGTTGTA
rJMFF018J21+ TTTCATTGGAAATGTTTCTTGTATGCCTTCATACCTTGTTGGAGTTTATTATTTGTTGTA
JMSF026E09- TTTCATTGGAAATGTTTCTTGTATGCCTTCATACCTTGTTGGAGTTTATTATTTGTTGTA
____________________________________________________________
consensus TTTCATTGGAAATGTTTCTTGTATGCCTTCATACCTTGTTGGAGTTTATTATTTGTTGTA
. : . : . : . : . : . :
rJMFF012D14+ TGATCTGACAT
rJMSF026E09+ TGATCTGACAT
rJMFF018J21+ TGATCTGACATTCTTTTCATTATGTAGTCCTTTTTTAGTGTTTCATAT
JMSF026E09- TGATCTGACATTCTTTTCATTATGTAGTCCTTTTTTAGTGTTTCATATTCNAAAAAAAAA
____________________________________________________________
consensus TGATCTGACATTCTTTTCATTATGTAGTCCTTTTTTAGTGTTTCATATTCNAAAAAAAAA