Contig 013367:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023G07Sequence679013367 (3)ref|XP_009627930.1|4e-15PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis]779007115 (4)ref|XP_011463401.1|2e-118PREDICTED: ATP-dependent helicase rhp16 isoform X2 [Fragaria vesca subsp. vesca
JMSF048A17Sequence675013367 (3)ref|XP_009627930.1|2e-16PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis]748007115 (4)ref|XP_011463401.1|1e-117PREDICTED: ATP-dependent helicase rhp16 isoform X2 [Fragaria vesca subsp. vesca
JMSF051A21Sequence612013367 (3)ref|XP_009627930.1|9e-12PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis]711007115 (4)ref|XP_011463401.1|2e-106PREDICTED: ATP-dependent helicase rhp16 isoform X2 [Fragaria vesca subsp. vesca

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048A17+                                                     CTGAAGGTGCNTCAGCAG
JMSF023G07+                                                    TCTGAAGGTGCCTCAGCAG
                      ____________________________________________________________
consensus                                                      TCTGAAGGTGCCTCAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+                                                   TATTGTGAAGTTCTCAACCA
JMSF048A17+           TTTCAGACATCACCTCATTTCGATTATCTATTTCACCATCTATTGTGAAGTTCTCAACCA
JMSF023G07+           TTTCAGACATCACCTCATTTCGATTATCTATTTCACCATCTATTGTGAAGTTCTCAACCA
                      ____________________________________________________________
consensus             TTTCAGACATCACCTCATTTCGATTATCTATTTCACCATCTATTGTGAAGTTCTCAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           GCCACTGGTCATTGTCATCATCCCACACTTCCCACATTAATATCGGTCTGTCCTTTCTCT
JMSF048A17+           GCCACTGGTCATTGTCATCATCCCACACTTCCCACATTAATATCGGTCTGTCCTTTCTCT
JMSF023G07+           GCCACTGGTCATTGTCATCATCCCACACTTCCCACATTAATATCGGTCTGTCCTTTCTCT
                      ____________________________________________________________
consensus             GCCACTGGTCATTGTCATCATCCCACACTTCCCACATTAATATCGGTCTGTCCTTTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           TCTTTATCCTTTTTTTCTTCCTCTCGTTTATCCGGTTTATCAGTGCAATGAATTCAGGAC
JMSF048A17+           TCTTTATCCTTTTTTTCTTCCTCTCGTTTATCCGGTTTATCAGTGCAATGAATTCAGGAC
JMSF023G07+           TCTTTATCCTTTTTTTCTTCCTCTCGTTTATCCGGTTTATCAGTGCAATGAATTCAGGAC
                      ____________________________________________________________
consensus             TCTTTATCCTTTTTTTCTTCCTCTCGTTTATCCGGTTTATCAGTGCAATGAATTCAGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           TCGTCGTATGAGGCCCTCCTACACCAAATTTACTCCCATCCACCACCTCTTCATTCTGTG
JMSF048A17+           TCGTCGTATGAGGCCCTCCTACACCAAATTTACTCCCATCCACCACCTCTTCATTCTGTG
JMSF023G07+           TCGTCGTATGAGGCCCTCCTACACCAAATTTACTCCCATCCACCACCTCTTCATTCTGTG
                      ____________________________________________________________
consensus             TCGTCGTATGAGGCCCTCCTACACCAAATTTACTCCCATCCACCACCTCTTCATTCTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           GTTTTTCTTCCTTAACGCCAGTATTCATTTCAATCCCCCTTCTTGTAGATCCAACCTTCC
JMSF048A17+           GTTTTTCTTCCTTAACGCCAGTATTCATTTCAATCCCCCTTCTTGTAGATCCAACCTTCC
JMSF023G07+           GTTTTTCTTCCTTAACGCCAGTATTCATTTCAATCCCCCTTCTTGTAGATCCAACCTTCC
                      ____________________________________________________________
consensus             GTTTTTCTTCCTTAACGCCAGTATTCATTTCAATCCCCCTTCTTGTAGATCCAACCTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           TCCTCCGCTTTGGCACCTTGTCCAAAACATCATCATCAGAAAACCCAACCTCATCATTTA
JMSF048A17+           TCCTCCGCTTTGGCACCTTGTCCAAAACATCATCATCAGAAAACCCAACCTCATCATTTA
JMSF023G07+           TCCTCCGCTTTGGCACCTTGTCCAAAACATCATCATCAGAAAACCCAACCTCATCATTTA
                      ____________________________________________________________
consensus             TCCTCCGCTTTGGCACCTTGTCCAAAACATCATCATCAGAAAACCCAACCTCATCATTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           CAAGATGGTTGAAAGGAAAACCTCCATTTTCATTCTCTTCTGAAATATCAATAATGCCAT
JMSF048A17+           CAAGATGGTTGAAAGGAAAACCTCCATTTTCATTCTCTTCTGAAATATCAATAATGCCAT
JMSF023G07+           CAAGATGGTTGAAAGGAAAACCTCCATTTTCATTCTCTTCTGAAATATCAATAATGCCAT
                      ____________________________________________________________
consensus             CAAGATGGTTGAAAGGAAAACCTCCATTTTCATTCTCTTCTGAAATATCAATAATGCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           CATCTTCACTGGTATGATAATCAGAATCGGAAGAAACCACGAGATGATTATCATCATCAG
JMSF048A17+           CATCTTCACTGGTATGATAATCAGAATCGGAAGAAACCACGAGATGATTATCATCATCAG
JMSF023G07+           CATCTTCACTGGTATGATAATCAGAATCGGAAGAAACCACGAGATGATTATCATCATCAG
                      ____________________________________________________________
consensus             CATCTTCACTGGTATGATAATCAGAATCGGAAGAAACCACGAGATGATTATCATCATCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           AGAACTCCACACGATGCGCACCCTTTTCTGCTTTCTTCCGAGGCCGTGAACGCTGATATC
JMSF048A17+           AGAACTCCACACGATGCGCACCCTTTTCTGCTTTCTTCCGAGGCCGTGAACGCTGATATC
JMSF023G07+           AGAACTCCACACGATGCGCACCCTTTTCTGCTTTCTTCCGAGGCCGTGAACGCTGATATC
                      ____________________________________________________________
consensus             AGAACTCCACACGATGCGCACCCTTTTCTGCTTTCTTCCGAGGCCGTGAACGCTGATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           GACGCTTCATTGAGCAAAATCGAAGAGATTAGGGTTTCCACACAGAGAAAAAACAAAGAT
JMSF048A17+           GACGCTTCATTGAGCAAAATCGAAGAGATTAGGGTTTCCACACAGAGAAAAAACAAAGAT
JMSF023G07+           GACGCTTCATTGAGCAAAATCGAAGAGATTAGGGTTTCCACACAGAGAAAAAACAAAGAT
                      ____________________________________________________________
consensus             GACGCTTCATTGAGCAAAATCGAAGAGATTAGGGTTTCCACACAGAGAAAAAACAAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051A21+           GAGTGGGTTTTAGAGAGAGATAGAAGCCGGAACACTCAGTCGCGTCTGCCT         
JMSF048A17+           GAGTGGGTTTTAGAGAGAGATAGAAGCCGGAACACTCAGTCGCGTCTGCCT         
JMSF023G07+           GAGTGGGTTTTAGAGAGAGATAGAAGCCGGAACACTCAGTCGCGTCTGCCTGCCCTTCTC
                      ____________________________________________________________
consensus             GAGTGGGTTTTAGAGAGAGATAGAAGCCGGAACACTCAGTCGCGTCTGCCTGCCCTTCTC