Contig 013353:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011A09Sequence518013353 (3)ref|XP_003635344.1|7e-14PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 60 [Vitis vinif711006808 (4)ref|XP_010266882.1|4e-70PREDICTED: probable protein phosphatase 2C 60 [Nelumbo nucifera] ref|XP_01026688
JMFF048I05Sequence539013353 (3)ref|XP_009803770.1|1e-57PREDICTED: probable protein phosphatase 2C 46 isoform X2 [Nicotiana sylvestris]
JMSF022B03Sequence686013353 (3)ref|XP_006343345.1|1e-34PREDICTED: probable protein phosphatase 2C 60-like isoform X1 [Solanum tuberosu770006808 (4)ref|XP_002530628.1|4e-102protein phosphatase 2c, putative [Ricinus communis] gb|EEF31736.1| protein phosp

Alignment

This contig is upended


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JMFF048I05+                                                          AGTCATAGAGTTT
                      ____________________________________________________________
consensus                                                            AGTCATAGAGTTT
 
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JMFF048I05+           TGCTCGGTGGGGAACCTCTGGAGATGCTGAAAGAGGGGATCATTGATAAACCGTGAGGTC
                      ____________________________________________________________
consensus             TGCTCGGTGGGGAACCTCTGGAGATGCTGAAAGAGGGGATCATTGATAAACCGTGAGGTC
 
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JMFF048I05+           TCCGGCCCACCATGACCATCATATACTCCAACAAAAGTCCCATAAGGACCAGAATCAAGT
JMSF022B03+                                             AAGTCCCATAAGGACCAGAATCAAGT
                      ____________________________________________________________
consensus             TCCGGCCCACCATGACCATCATATACTCCAACAAAAGTCCCATAAGGACCAGAATCAAGT
 
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JMFF048I05+           AAGCTCAAAGATCCAGACTCAATCTGGCTTGGATCCTCAAGCAAATTGTTTGCCTGGACA
JMSF022B03+           AAGCTCAAAGATCCAGACTCAATCTGGCTTTGATCCTCAAGCAAATTGTTTGCCTGGACA
                      ____________________________________________________________
consensus             AAGCTCAAAGATCCAGACTCAATCTGGCTTTGATCCTCAAGCAAATTGTTTGCCTGGACA
 
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JMFF048I05+           ACAGCCATTGAGAAATCACCAAGCAAGTGCTGCCCAATGTCCTTATACCAAAGAAGTCCA
JMSF022B03+           ACAGCCATTGAGAAATCACCAAGCAAGTGCTGCCCAATGTCCTTATACCAAAGAAGTCCA
                      ____________________________________________________________
consensus             ACAGCCATTGAGAAATCACCAAGCAAGTGCTGCCCAATGTCCTTATACCAAAGAAGTCCA
 
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JMFF048I05+           TCCTGCCGGCAAGTAGCATCGAAACCCTTACGGACGTGGCTGTTGGATGATGAGCGCCAA
JMSF022B03+           TCCTGCCGGCAAGTAGCATCGAAACCCTTACGGACGTGGCTGTTGGATGATGAGCGCCAA
                      ____________________________________________________________
consensus             TCCTGCCGGCAAGTAGCATCGAAACCCTTACGGACGTGGCTGTTGGATGATGAGCGCCAA
 
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JMFF048I05+           CAGGTCTTCAGGAAATTTATCAACCTTGATAACATGCCTCATTTCATCCCGGCTTACTGA
JMSF022B03+           CAGGTCTTCAGGAAATTTATCAACCTTGATAACATGCCTCATTTCATCCCGGCTTACTGA
                      ____________________________________________________________
consensus             CAGGTCTTCAGGAAATTTATCAACCTTGATAACATGCCTCATTTCATCCCGGCTTACTGA
 
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JMFF048I05+           CAAATCTACAACATCCAAAATGGATGCAAGAGCGCTCCAACTAAAAGCCCCTCACAACCA
JMSF022B03+           CAAATCTACAACATCCAAAATGGATGCAAGAGCGCTCCAACTAAAAGCCCCTCACAACCA
                      ____________________________________________________________
consensus             CAAATCTACAACATCCAAAATGGATGCAAGAGCGCTCCAACTAAAAGCCCCTCACAACCA
 
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JMFF048I05+           ATCTCTCTCAGAGTGGAGTTTGTGGGGTGCTTTTATGCTGTTTGCTGGTCGCTGACTGAA
JMFF011A09+                 CTCAGAGTGGAGTTTGTGGGGTGCTTTTATGCTGTTTGCTGGTCGCTGACTGAA
JMSF022B03+           ATCTCTCTCAGAGTGGAGTTTGTGGGGTGCTTTTATGCTGTTTGCTGGTCGCTGACTGAA
                      ____________________________________________________________
consensus             ATCTCTCTCAGAGTGGAGTTTGTGGGGTGCTTTTATGCTGTTTGCTGGTCGCTGACTGAA
 
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JMFF048I05+           CCCTGACAACTGAAAACGACTGAGATCCGAATCAAAAATTACCAAT              
JMFF011A09+           CCCTGACAACTGAAAACGACTGAGATCCGAATCAAAAATTAGCAATCTCAAAGCGTTAGA
JMSF022B03+           CCCTGACAACTGAAAACGACTGAGATCCGAATCAAAAATTAGCAATCTCAAAGCGTTAGA
                      ____________________________________________________________
consensus             CCCTGACAACTGAAAACGACTGAGATCCGAATCAAAAATTAGCAATCTCAAAGCGTTAGA
 
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JMFF011A09+           TCTATAAAGAAGCCATCAAATCGCCCCTTCCTTCATACACACTGAAGAAAATACGTTAAA
JMSF022B03+           TCTATGAAGAAGCCATCAAATCGCCCCTTCCTTCATACACACTGAAGAAAATACGTTAAA
                      ____________________________________________________________
consensus             TCTATGAAGAAGCCATCAAATCGCCCCTTCCTTCATACACACTGAAGAAAATACGTTAAA
 
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JMFF011A09+           TTTAACTTCCTTTTCAGGTCTTACTTTCTCTAATTCTGATTTTTGCTCAAAATAAGAGAA
JMSF022B03+           TTTAACTTCCTTTTCAGGTCTTACTTTCTCTAATTCTGATTTTTGCTCAAAATAAGAGAA
                      ____________________________________________________________
consensus             TTTAACTTCCTTTTCAGGTCTTACTTTCTCTAATTCTGATTTTTGCTCAAAATAAGAGAA
 
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JMFF011A09+           GGGGGAGAAAGGAAGAAAGCTTCACGAATTGAACAAACTGATGAAC              
JMSF022B03+           GGGGGAGAAAGGAAGAAAGCTTCACGAATTGAACAAACTGATGAACAACTCTCTTCTATT
                      ____________________________________________________________
consensus             GGGGGAGAAAGGAAGAAAGCTTCACGAATTGAACAAACTGATGAACAACTCTCTTCTATT
 
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JMSF022B03+           CCTTTTTTCTTCCCTTTTTTGTGTATCTTCGTGGAATAACTGGCAAAAGCCTAATCGCCC
                      ____________________________________________________________
consensus             CCTTTTTTCTTCCCTTTTTTGTGTATCTTCGTGGAATAACTGGCAAAAGCCTAATCGCCC