Contig 013350:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018N19Sequence572013350 (5)ref|XP_009762552.1|8e-69PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2 [Nicotiana sylv760001197 (4)ref|XP_009762550.1|4e-123PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X1 [Nicotiana sylv
JMFF025O15Sequence631013350 (5)ref|XP_009597617.1|5e-92PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2 [Nicotiana tome766001197 (4)ref|XP_009762550.1|5e-125PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X1 [Nicotiana sylv
JMFF044C17Sequence634013350 (5)ref|XP_009762552.1|1e-79PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2 [Nicotiana sylv621001197 (4)ref|XP_006349655.1|4e-79PREDICTED: CCR4-NOT transcription complex subunit 11-like [Solanum tuberosum]
JMSF021L13Sequence603013350 (5)ref|XP_009762552.1|9e-70PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2 [Nicotiana sylv785022533ref|XP_009762550.1|7e-139PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X1 [Nicotiana sylv
JMSF045E10Sequence426013350 (5)ref|XP_006349655.1|3e-11PREDICTED: CCR4-NOT transcription complex subunit 11-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF025O15+                   ATATCCCCAGATCCAATCTTTGGTTTAGATCCTGGTTGTAAATCAAACTCTG
                      ____________________________________________________________
consensus                     ATATCCCCAGATCCAATCTTTGGTTTAGATCCTGGTTGTAAATCAAACTCTG
 
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JMFF025O15+           GTGAACTGCTATCACAACCATGCGGCAAATCAGGATCTGGAATGGTATTTTTCACCAAGT
JMFF044C17+             GAACTGCTATCACAACCATGCGGCAAATCAGGATCTGGAATGGTATTTTTCACCAAGT
                      ____________________________________________________________
consensus             GTGAACTGCTATCACAACCATGCGGCAAATCAGGATCTGGAATGGTATTTTTCACCAAGT
 
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JMFF025O15+           TGCTCTTGAACAAGCAGCTAAATGGTTCTGGCAAAGCTTTACCTTCATACTTCTCTTTCA
JMFF018N19+                   AACAAGCAGCTAAATGGTTCTGGCAAAGCTTTACCTTCATACTTCTCTTTCA
JMFF044C17+           TGCTCTGNAACAAGCAGCTAAATGGTTCTGGCAAAGCTTTACCTTCATACTTCTCTTTCA
JMSF021L13+               CTTGAACAAGCAGCTAAATGGTTCTGGCAAAGCTTTACCTTCATACTTCTCTTTCA
                      ____________________________________________________________
consensus             TGCTCTTGAACAAGCAGCTAAATGGTTCTGGCAAAGCTTTACCTTCATACTTCTCTTTCA
 
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JMFF025O15+           ACTGTCCGCGTTGTGGGAAAGAATGTCGTGAAGGTTCAAAACTTTTCATGTAATCTGTAG
JMFF018N19+           ACTGTCCGCGTTGTGGGAAAGAATGTCGTGAAGGTTCAAAACTTTTCATGTAATCTGTAG
JMFF044C17+           ACTGTCCGCGTTGTGGGAAAGAATGTCGTGAAGGTTCAAAACTTTTCATGTAATCTGTAG
JMSF021L13+           ACTGTCCGCGTTGTGGGAAAGAATGTCGTGAAGGTTCAAAACTTTTCATGTAATCTGTAG
                      ____________________________________________________________
consensus             ACTGTCCGCGTTGTGGGAAAGAATGTCGTGAAGGTTCAAAACTTTTCATGTAATCTGTAG
 
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JMFF025O15+           CAGACTGTTTCAAAACCTCTTTACTATTGGCAGAGTTTAGCAACTGAAGTATAAATGCCC
JMFF018N19+           CAGACTGTTTCAAAACCTCTTTACTATTGGCAGAGTTTAGCAACTGAAGTATAAATGCCC
JMFF044C17+           CAGACTGTTTCAAAACCTCTTTACTATTGGCAGAGTTTAGCAACTGAAGTATAAATGCCC
JMSF021L13+           CAGACTGTTTCAAAACCTCTTTACTATTGGCAGAGTTTAGCAACTGAAGTATAAATGCCC
                      ____________________________________________________________
consensus             CAGACTGTTTCAAAACCTCTTTACTATTGGCAGAGTTTAGCAACTGAAGTATAAATGCCC
 
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JMFF025O15+           TTTCACATTTTTCAGCTTCTTCTTCAGATGCTGCATTTACAAGCAAAGAAATGAAGGGAT
JMFF018N19+           TTTCACATTTTTCAGCTTCTTCTTCAGATGCTGCATTTACAAGCAAAGAAATGAAGGGAT
JMFF044C17+           TTTCACATTTTTCAGCTTCTTCTTCAGATGCTGCATTTACAAGCAAAGAAATGAAGGGAT
JMSF021L13+           TTTCACATTTTTCAGCTTCTTCTTCAGATGCTGCATTTACAAGCAAAGAAATGAAGGGAT
                      ____________________________________________________________
consensus             TTTCACATTTTTCAGCTTCTTCTTCAGATGCTGCATTTACAAGCAAAGAAATGAAGGGAT
 
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JMFF025O15+           TTGAAGAAGGCTCCTGGGAAGAATACACTCGATAAAGAATTGCAAAAGCAACCAATCGCT
JMFF018N19+           TTGAAGAAGGCTCCTGGGAAGAATACACTCGATAAAGAATTGCAAAAGCAACCAATCGCT
JMFF044C17+           TTGAAGAAGGCTCCTGGGAAGAATACACTCGATAAAGAATTGCAAAAGCAACCAATCGCT
JMSF021L13+           TTGAAGAAGGCTCCTGGGAAGAATACACTCGATAAAGAATTGCAAAAGCAACCAATCGCT
                      ____________________________________________________________
consensus             TTGAAGAAGGCTCCTGGGAAGAATACACTCGATAAAGAATTGCAAAAGCAACCAATCGCT
 
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JMFF025O15+           GAGAAAGTTTAAGAAATTTCCCCTCAAGTATCAAGGCGAGGGAGATGCAGGCATTGAAAT
JMFF018N19+           GAGAAAGTTTAAGAAATTTCCCCTCAAGTATCAAGGCGAGGGAGATGCAGGCATTGAAAT
JMSF045E10+                                CCTCAAGTATCAAGGCGAGGGAGATGCAGGCATTGAAAT
JMFF044C17+           GAGAAAGTTTAAGAAATTTCCCCTCAAGTATCAAGGCGAGGGAGATGCAGGCATTGAAAT
JMSF021L13+           GAGAAAGTTTAAGAAATTTCCCCTCAAGTATCAAGGCGAGGGAGATGCAGGCATTGAAAT
                      ____________________________________________________________
consensus             GAGAAAGTTTAAGAAATTTCCCCTCAAGTATCAAGGCGAGGGAGATGCAGGCATTGAAAT
 
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JMFF025O15+           GACGAGAAGGAGGGAATTTTGATTTGAAATCGGCGACGATCTCTTCCAACGGCCGTTGTT
JMFF018N19+           GACGAGAAGGAGGGAATTTTGATTTGAAATCGGCGACGATCTCTTCCAACGGCCGTTGTT
JMSF045E10+           GACGAGAAGGAGGGAATTTTGATTTGAAATCGGCGACGATCTCTTCCAACGGCCGTTGTT
JMFF044C17+           GACGAGAAGGAGGGAATTTTGATTTGAAATCGGCGACGATCTCTTCCAACGGCCGTTGTT
JMSF021L13+           GACGAGAAGGAGGGAATTTTGATTTGAAATCGGCGACGATCTCTTCCAACGGCCGTTGTT
                      ____________________________________________________________
consensus             GACGAGAAGGAGGGAATTTTGATTTGAAATCGGCGACGATCTCTTCCAACGGCCGTTGTT
 
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JMFF025O15+           GATCTTCTCCGGCATTGAGTAGCGCCAACAGCTTACCAGATTCTTCTTTTCCGAGCATTT
JMFF018N19+           GATCTTCTCCGGCATTGAGTAGCGCCAACAGCTTACCAGATTCTTCTTTTCCGAGCATTT
JMSF045E10+           GATCTTCTCCGGCATTGAGTAGCGCCAACAGCTTACCAGATTCTTCTTTTCCGAGCATTT
JMFF044C17+           GATCTTCTCCGGCATTGAGTAGCGCCAACAGCTTACCAGATTCTTCTTTTCCGAGCATTT
JMSF021L13+           GATCTTCTCCGGCATTGAGTAGCGCCAACAGCTTACCAGATTCTTCTTTTCCGAGCATTT
                      ____________________________________________________________
consensus             GATCTTCTCCGGCATTGAGTAGCGCCAACAGCTTACCAGATTCTTCTTTTCCGAGCATTT
 
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JMFF025O15+           TCGCTCCAGGAGTACGACGACTCAAAGTCTCGCGCTCTC                     
JMFF018N19+           TCGCTCCAGGAGTACGACGACTCAAAGTCTCGCGCTCTCAACAAATGATTGTCTTCTTCT
JMSF045E10+           TCGCTCCAGGAGTACGACGACTCAAAGTCTCGCGCTCTCAACAAATGATTGTCTTCT   
JMFF044C17+           TCGCTCCAGGAGTACGACGACTCAAAGTCTCGCGCTCTCAACAAATGATTGTCTTCTTCT
JMSF021L13+           TCGCTCCAGGAGTACGACGACTCAAAGTCTCGCGCTCTCAACAAATGATTGTCTTCTTCT
                      ____________________________________________________________
consensus             TCGCTCCAGGAGTACGACGACTCAAAGTCTCGCGCTCTCAACAAATGATTGTCTTCTTCT
 
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JMFF018N19+           ACAGTTATTTTTCTCAAGTCAGCGAAATCCTTAATC                        
JMFF044C17+           ACAGTTATTTTTCTCAAGTCAGCGAAATCCTTAATC                        
JMSF021L13+           ACAGTTATTTTTCTCAAGTCAGCGAAATCCTTAATCCCAGGGCCGGATACCGGTGGATCA
                      ____________________________________________________________
consensus             ACAGTTATTTTTCTCAAGTCAGCGAAATCCTTAATCCCAGGGCCGGATACCGGTGGATCA