clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF023A21 | Sequence | 415 | 013347 (8) | ref|XP_009604633.1| | 2e-63 | PREDICTED: chromophore lyase CRL, chloroplastic isoform X2 [Nicotiana tomentosi | |||||
JMFF024K07 | Sequence | 456 | 013347 (8) | ref|XP_009604633.1| | 2e-70 | PREDICTED: chromophore lyase CRL, chloroplastic isoform X2 [Nicotiana tomentosi | 737 | 013347 (8) | ref|XP_010322633.1| | 8e-144 | PREDICTED: chromophore lyase CRL, chloroplastic isoform X4 [Solanum lycopersicu |
JMFF048G20 | Sequence | 252 | 013347 (8) | ref|XP_009604632.1| | 1e-08 | PREDICTED: chromophore lyase CRL, chloroplastic isoform X1 [Nicotiana tomentosi | 292 | 013347 (8) | ref|XP_009771376.1| | 111 | PREDICTED: chromophore lyase CRL, chloroplastic [Nicotiana sylvestris] |
JMFN013G07 | Sequence | 627 | 013347 (8) | ref|XP_009604633.1| | 1e-101 | PREDICTED: chromophore lyase CRL, chloroplastic isoform X2 [Nicotiana tomentosi | |||||
JMSF021H04 | Sequence | 690 | 013347 (8) | ref|XP_009604632.1| | 2e-113 | PREDICTED: chromophore lyase CRL, chloroplastic isoform X1 [Nicotiana tomentosi | 747 | 013347 (8) | ref|XP_009604633.1| | 3e-150 | PREDICTED: chromophore lyase CRL, chloroplastic isoform X2 [Nicotiana tomentosi |
This contig is upended
. : . : . : . : . : . :
rJMFF048G20- GCGTAAATCAACGGAA
____________________________________________________________
consensus GCGTAAATCAACGGAA
. : . : . : . : . : . :
rJMFF048G20- AATATATATTGATAGACTCGATATGGGAGTTTGAAATTTACATTACAATACTACAGAACA
rJMFF024K07- TTGATAGACTCGATATGGGAGTTTGAAATTTACATTACAATACTACAGAACA
rJMSF021H04- GGGAGTTTGAAATTTACATTACAATACTACAGAACA
____________________________________________________________
consensus AATATATATTGATAGACTCGATATGGGAGTTTGAAATTTACATTACAATACTACAGAACA
. : . : . : . : . : . :
rJMFF048G20- AAGTATCAATCTTGAATAACAAATGAACCCTCTATTCTTTTCTCTATGGATGGGGAAGAC
rJMFF024K07- AAGTATCAATCTTGAATAACAAATGAACCCTCTATTCTTTTCTCTATGGATGGGGAAGAC
rJMSF021H04- AAGTATCAATCTTGAATAACAAATGAACCCTCTATTCTTTTCTCTATGGATGGGGAAGAC
____________________________________________________________
consensus AAGTATCAATCTTGAATAACAAATGAACCCTCTATTCTTTTCTCTATGGATGGGGAAGAC
. : . : . : . : . : . :
rJMFF048G20- AACATCAAAGCGGAAAGGTCATCAAAACTAGAAGCTGGTGCAGGTTTGAACTCATATGGA
rJMFF024K07- AACATCAAAGCGGAAAGGTCATCAAAACTAGAAGCTGGTGCAGGTTTGAACTCATATGGA
rJMSF021H04- AACATCAAAGCGGAAAGGTCATCAAAACTAGAAGCTGGTGCAGGTTTGAACTCATATGGA
____________________________________________________________
consensus AACATCAAAGCGGAAAGGTCATCAAAACTAGAAGCTGGTGCAGGTTTGAACTCATATGGA
. : . : . : . : . : . :
rJMFF048G20- CCTCCCTTTACACCCCAGACCTGATTTCCACTCTCATCGTAGCCTCTATCCCAGGAATGT
rJMFF024K07- CCTCCCTTTACACCCCAGACCTGATTTCCACTCTCATCGTAGCCTCTATCCCAGGAATGT
rJMSF021H04- CCTCCCTTTACACCCCAGACCTGATTTCCACTCTCATCGTAGCCTCTATCCCAGGAATGT
____________________________________________________________
consensus CCTCCCTTTACACCCCAGACCTGATTTCCACTCTCATCGTAGCCTCTATCCCAGGAATGT
. : . : . : . : . : . :
rJMFF048G20- ATCTCATTATTCTTCACCACTGCAAGTTCTGACGTA
rJMFF024K07- ATCTCATTATTCTTCAGCACTGCAAGTTCTGACGTACAATATGATGCACCGTTCCATGTA
rJMSF021H04- ATCTCATTATTCTTCAGCACTGCAAGTTCTGACGTACAATATGATGCACCGTTCCATGTA
____________________________________________________________
consensus ATCTCATTATTCTTCAGCACTGCAAGTTCTGACGTACAATATGATGCACCGTTCCATGTA
. : . : . : . : . : . :
rJMFF024K07- TTAGGAAATCCATCTGCAGGTGTAGATCCTTCATATAAGCATCGCTTCCCACGCTCACAG
rJMSF021H04- TTAGGAAATCCATCTGCAGGTGTAGATCCTTCATATAAGCATCGCTTCCCACGCTCACAG
JMSF021H04+ TCATATAAGCATCGCTTCCCACGCTCACAG
____________________________________________________________
consensus TTAGGAAATCCATCTGCAGGTGTAGATCCTTCATATAAGCATCGCTTCCCACGCTCACAG
. : . : . : . : . : . :
rJMFF024K07- CGTTTCAGATGAATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
rJMSF021H04- CGTTTCAGATGAATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
JMFN013G07+ ATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
JMSF021H04+ CGTTTCAGATGAATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
____________________________________________________________
consensus CGTTTCAGATGAATGGTAGTCAAATGTTCAGCAATATCCCCAATAACTTCTTCAGGTTGT
. : . : . : . : . : . :
rJMFF024K07- GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
rJMSF021H04- GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
JMFN013G07+ GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
JMSF021H04+ GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
____________________________________________________________
consensus GGGCGCTGGTCCTTAGGCCGATCACAGAAGTTCTTGTACTCCTCTGCATCTCTGAGAGCA
. : . : . : . : . : . :
rJMFF024K07- TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
rJMSF021H04- TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
JMFF023A21+ CAATGCAAAAT
JMFF024K07+ ACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
JMFN013G07+ TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
JMSF021H04+ TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
____________________________________________________________
consensus TATGTGCTGACCTCAACATCACATCTCATCTCCTTTGGACAAGGCTTGACAATGCAAAAT
. : . : . : . : . : . :
rJMFF024K07- CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
rJMSF021H04- CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
JMFF023A21+ CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
JMFF024K07+ CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
JMFN013G07+ CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
JMSF021H04+ CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
____________________________________________________________
consensus CTCTGCCGAAAAGGCTTATGAGGTGTCCTCCAGAATGCCTGCTCAAAATATAAGACCTTC
. : . : . : . : . : . :
rJMFF024K07- GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
rJMSF021H04- GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
JMFF023A21+ GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
JMFF024K07+ GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
JMFN013G07+ GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
JMSF021H04+ GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
____________________________________________________________
consensus GAGCCATCTACCATGTCAGCAGCTGGGCATGAAAGCCATCTCAAATTGAAGTAACTATCA
. : . : . : . : . : . :
rJMFF024K07- GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
rJMSF021H04- GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
JMFF023A21+ GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
JMFF024K07+ GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
JMFN013G07+ GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
JMSF021H04+ GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
____________________________________________________________
consensus GGGTCTCTAGCAGCTTGCTGTTTGGAAAACTTTTCTCCACTGAGAGACTGAGCCACAATC
. : . : . : . : . : . :
rJMFF024K07- CCAGCATGGTCCCAACGGGTGGTGG
rJMSF021H04- CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGT
JMFF023A21+ CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
JMFF024K07+ CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
JMFN013G07+ CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
JMFF048G20+ CGAGAAGTGCCCCTCCG
JMSF021H04+ CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
____________________________________________________________
consensus CCAGCATGGTCCCAACGGGTGGTGGACTTGGTGAGACGCCTAACGAGAAGTGCCCCTCCG
. : . : . : . : . : . :
JMFF023A21+ ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
JMFF024K07+ ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
JMFN013G07+ ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
JMFF048G20+ ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
JMSF021H04+ ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
____________________________________________________________
consensus ATCAAAACCAGCGTCTTCAGCACCACCCCACGGGCTCGATCCCACCCATTCGGATTCTCC
. : . : . : . : . : . :
JMFF023A21+ TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
JMFF024K07+ TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
JMFN013G07+ TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
JMFF048G20+ TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
JMSF021H04+ TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
____________________________________________________________
consensus TCCGACTTGGGGTCCAAACCCGAGTCCGAACCCGTACACATACTCGATTGAACCGCACTC
. : . : . : . : . : . :
JMFF023A21+ ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAACCAAC
JMFF024K07+ ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTAT
JMFN013G07+ ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTATACACTCTTC
JMFF048G20+ ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTATACACTCTTC
JMSF021H04+ ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTATACACTCTTC
____________________________________________________________
consensus ACCAGCTCCCCAAAACCGGATGATTCTTCACGCCATCAATCAACAACTTATACACTCTTC
. : . : . : . : . : . :
JMFN013G07+ AACTCCAGAATTGCAAATTATATTTTCTCCTTCCGTGCG
JMFF048G20+ AACTCCAGAATTGCAAATTATATTTTCTCCTTCCGTGCGCCCTATCTCACT
JMSF021H04+ AACTCCAGAATTGCAAATTATATTTTCTCCTTCCGTGCGCCCTATCTCACTCTTCGTGTC
____________________________________________________________
consensus AACTCCAGAATTGCAAATTATATTTTCTCCTTCCGTGCGCCCTATCTCACTCTTCGTGTC