Contig 013318:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021K07Sequence498013318 (15)ref|XP_006430167.1|2e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P461013318 (15)ref|XP_006430167.1|1e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMFF030B01Sequence400013318 (15)ref|XP_006430167.1|5e-46hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P459013318 (15)ref|XP_006430167.1|1e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMFF032F24Sequence496013318 (15)ref|XP_006430167.1|2e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P474013318 (15)ref|XP_006430167.1|1e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMFN003M14Sequence473013318 (15)ref|XP_006430167.1|1e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMFN008D15Sequence468013318 (15)ref|XP_006430167.1|1e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMFN015K22Sequence467013318 (15)ref|XP_006430167.1|1e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMFN020I14Sequence474013318 (15)ref|XP_006430167.1|1e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMFN030J16Sequence455013318 (15)ref|XP_006430167.1|8e-46hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMFN034D18Sequence394013318 (15)gb|KDO70466.1|4e-30hypothetical protein CISIN_1g0348952mg, partial [Citrus sinensis] gb|KDO70467.1|
JMFN043B08Sequence468013318 (15)ref|XP_006430167.1|1e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMFN044G23Sequence476013318 (15)ref|XP_006430167.1|7e-45hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P
JMSF017F12Sequence506013318 (15)ref|XP_006430167.1|1e-44hypothetical protein CICLE_v10013235mg [Citrus clementina] ref|XP_006481749.1| P733012404 (12)emb|CDP06049.1|1e-109unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN034D18+                                                      AAACTAAAAATTAAAAT
JMFF021K07+                                    TTTTTTTTTTGACTAGATAAACTAAAAATTAAAAT
JMFN020I14+                                                      AAACTAAAAATTAAAAT
JMFN003M14+                                                      AAACTAAAAATTAAAAT
JMFN044G23+                                                      AAACTAAAAATTAAAAT
JMFN015K22+                                                       AACTAAAAATTAAAAT
JMFN043B08+                                                      AAACTAAAAATTAAAAT
JMFN008D15+                                                      AAACTAAAAATTAAAAT
JMFN030J16+                                                      AAACTAAAAATTAAAAT
JMFF032F24+                                                      AAACTAAAAATTAAAAT
JMSF017F12+                                                       AACTAAAAATTAAAAT
                      ____________________________________________________________
consensus                                      TTTTTTTTTTGACTAGATAAACTAAAAATTAAAAT
 
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JMFN034D18+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMFF021K07+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMFN020I14+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMFN003M14+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMFN044G23+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMFN015K22+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMFN043B08+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMFN008D15+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
rJMFF021K07-            ATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMFN030J16+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMFF032F24+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
rJMFF032F24-              TGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
rJMFF030B01-                              AATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
JMSF017F12+           CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
                      ____________________________________________________________
consensus             CCATTGCCACCAAAGTACATAATAGCAATCAAATTCAGCTCAGTCATATGATAACTTGTT
 
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JMFN034D18+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
JMFF021K07+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGCACTAGTAGACCTATAATGCTTCCACAA
JMFN020I14+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
JMFN003M14+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
JMFN044G23+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
JMFN015K22+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
JMFN043B08+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
JMFN008D15+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
rJMFF021K07-          CTGCTTCAATACTTTGGAAACCTAACAAAAAGCACTAGTAGACCTATAATGCTTCCACAA
JMFN030J16+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
JMFF032F24+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
rJMFF032F24-          CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
rJMFF030B01-          CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
JMFF030B01+                              ACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
JMSF017F12+           CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
                      ____________________________________________________________
consensus             CTGCTTCAATACTTTGGAAACCTAACAAAAAGTACTAGTAGACCTATAATGCTTCCACAA
 
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JMFN034D18+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFF021K07+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFN020I14+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFN003M14+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFN044G23+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFN015K22+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFN043B08+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFN008D15+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
rJMFF021K07-          AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFN030J16+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFF032F24+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
rJMFF032F24-          AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
rJMFF030B01-          AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMFF030B01+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
JMSF017F12+           AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
                      ____________________________________________________________
consensus             AGCAGCAGGCATTGGTACATAGATGAAATTAACAAGGTGATGACTGCATCAGCAGCTACT
 
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JMFN034D18+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFF021K07+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFN020I14+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFN003M14+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFN044G23+           AGCGCTACGATCTGGCAAAGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFN015K22+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFN043B08+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFN008D15+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
rJMFF021K07-          AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFN030J16+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFF032F24+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
rJMFF032F24-          AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
rJMFF030B01-          AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMFF030B01+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
JMSF017F12+           AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
                      ____________________________________________________________
consensus             AGCGCTACGATCTGGCAACGGGCTCCAATGCTTCAATAGTAACAACGCTGTTTCCCCGAA
 
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JMFN034D18+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFF021K07+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFN020I14+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFN003M14+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFN044G23+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFN015K22+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFN043B08+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFN008D15+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
rJMFF021K07-          TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFN030J16+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFF032F24+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
rJMFF032F24-          TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
rJMFF030B01-          TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMFF030B01+           TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
JMSF017F12+           TAACCACCACGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
                      ____________________________________________________________
consensus             TAACCACCATGCCAATATCATTCTTTTCATTGCCGTTAACCTCCACAGTGTTATCAATGA
 
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JMFN034D18+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFF021K07+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFN020I14+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFN003M14+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFN044G23+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFN015K22+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFN043B08+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFN008D15+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
rJMFF021K07-          CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFN030J16+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFF032F24+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
rJMFF032F24-          CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
rJMFF030B01-          CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMFF030B01+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
JMSF017F12+           CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
                      ____________________________________________________________
consensus             CCAAATTCATGAACTGATCAAACCCACGAAGAGTCCCGACTACCATGCGATTGGCATTCA
 
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JMFN034D18+           TCTTAATT                                                    
JMFF021K07+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMFN020I14+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMFN003M14+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMFN044G23+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMFN015K22+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMFN043B08+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMFN008D15+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
rJMFF021K07-          TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMFN030J16+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMFF032F24+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
rJMFF032F24-          TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
rJMFF030B01-          TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMFF030B01+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
JMSF017F12+           TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
                      ____________________________________________________________
consensus             TCTTAATTTGGAGTTTCTTGTCCATGTACTTTTTTAGATCCGGAGGCTGACCCGACCGAC
 
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JMFF021K07+           TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAGAGAAGT                 
JMFN020I14+           TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAG                       
JMFN003M14+           TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCA                        
JMFN044G23+           TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAGAG                     
JMFN015K22+           TCATGCTGCTGCGCTTCCCGTTTTCGTCTCA                             
JMFN043B08+           TCATGCTGCTGCGCTTCCCGTTTTCG                                  
JMFN008D15+           TCATGCTGCTGCGCTTCCCGTTTTCGTCTCA                             
rJMFF021K07-          TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAGAGAAGT                 
JMFN030J16+           TCATGCTGCTGCGCTTCC                                          
JMFF032F24+           TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAGAGAAGTGAAGAAGAAAGTTT   
rJMFF032F24-          TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAGAGAAGTGAAGAAGAAAGTTT   
rJMFF030B01-          TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAGAGAAGTGAAGAAGAAAGTTT   
JMFF030B01+           TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAGAGAAGTGAAGAAGAAAGTTT   
JMSF017F12+           TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAGAGAAGTGAAGAAGAAAGTTTGCC
                      ____________________________________________________________
consensus             TCATGCTGCTGCGCTTCCCGTTTTCGTCTCAGACCAGAGAAGTGAAGAAGAAAGTTTGCC