Contig 013308:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016B11Sequence441013308 (2)ref|XP_009798569.1|6e-50PREDICTED: mortality factor 4-like protein 1 isoform X4 [Nicotiana sylvestris]557013308 (2)ref|XP_009798569.1|2e-49PREDICTED: mortality factor 4-like protein 1 isoform X4 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF016B11- GTACAAAACTTTCATGA
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consensus GTACAAAACTTTCATGA
 
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rJMSF016B11- TACAGGCAATATAATCAGCAGCTACAGTTCAATTTGCACAGAGCATTAAGATTTATACAG
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consensus TACAGGCAATATAATCAGCAGCTACAGTTCAATTTGCACAGAGCATTAAGATTTATACAG
 
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rJMSF016B11- CAGTTAACACTATTGTTACAGGGAAACAGGGATTGGCTCTTCCTCCAAGCAGCTGCAGCT
JMSF016B11+ TTCCTCCAAGCAGCTGCAGCT
                      ____________________________________________________________
consensus CAGTTAACACTATTGTTACAGGGAAACAGGGATTGGCTCTTCCTCCAAGCAGCTGCAGCT
 
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rJMSF016B11- GCGGCTCTCTTAACCCATACATATGTGTGTCCCGGATGAATACTAGTGCAAAGGAAAAAA
JMSF016B11+ GCGGCTCTCTTAACCCATACATATGTGTGTCCCGGATGAATACTAGTGCAAAGGAAAAAA
                      ____________________________________________________________
consensus GCGGCTCTCTTAACCCATACATATGTGTGTCCCGGATGAATACTAGTGCAAAGGAAAAAA
 
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rJMSF016B11- GAAAATGGCAGTAGCATGTTCAAGTAAGCGATGTTTGGATGAACAGATAGATAGTGTTGG
JMSF016B11+ GAAAATGGCAGTAGCATGTTCAAGTAAGCGATGTTTGGATGAACAGATAGATAGTGTTGG
                      ____________________________________________________________
consensus GAAAATGGCAGTAGCATGTTCAAGTAAGCGATGTTTGGATGAACAGATAGATAGTGTTGG
 
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rJMSF016B11- GTGTTCAACTGTCTTTCACCTTGCCAGATCCATCAGAAGCTTTAGCAGTTTCATAAGTAG
JMSF016B11+ GTGTTCAACTGTCTTTCACCTTGCCAGATCCATCAGAAGCTTTAGCAGTTTCATAAGTAG
                      ____________________________________________________________
consensus GTGTTCAACTGTCTTTCACCTTGCCAGATCCATCAGAAGCTTTAGCAGTTTCATAAGTAG
 
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rJMSF016B11- AAACAAAAAACGCACCCTGATTTTTCTGCACAAATTTTAGAAAATCCAACAATTTCTGCT
JMSF016B11+ AAACAAAAAACGCACCCTGATTTTTCTGCACAAATTTTAGAAAATCCAACAATTTCTGCT
                      ____________________________________________________________
consensus AAACAAAAAACGCACCCTGATTTTTCTGCACAAATTTTAGAAAATCCAACAATTTCTGCT
 
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rJMSF016B11- GCAAGCGGATCAATGTCTCCTCTTCAATTTTCACGTAAGAAAGCAATTCAGGCAACTTAA
JMSF016B11+ GCAAGCGGATCAATGTCTCCTCTTCAATTTTCACGTAAGAAAGCAATTCAGGCAACTTAA
                      ____________________________________________________________
consensus GCAAGCGGATCAATGTCTCCTCTTCAATTTTCACGTAAGAAAGCAATTCAGGCAACTTAA
 
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rJMSF016B11- CAAAAAGACGCAAAAGATGTTCAGCACCATATACACTTGATGGAGAGACATTATCTGAAA
JMSF016B11+ CAAAAAGACGCAAAAGATGTTCAGCACCATATACACTTGATGGAGAGACATTATCTGAAA
                      ____________________________________________________________
consensus CAAAAAGACGCAAAAGATGTTCAGCACCATATACACTTGATGGAGAGACATTATCTGAAA
 
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rJMSF016B11- CTGCTTCATGATACTGTTGGCGCTCCTTTTTATACAAAAG
JMSF016B11+ CTGCTTCATGATACTGTTGGCGCTCCTTTTTATACAAAAGCAGAACCGGCAAGGCTTTGT
                      ____________________________________________________________
consensus CTGCTTCATGATACTGTTGGCGCTCCTTTTTATACAAAAGCAGAACCGGCAAGGCTTTGT