Contig 013307:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016A04Sequence285013307 (3)ref|XP_009776380.1|4e-16PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Nicotiana sylve788012568 (2)gb|KJB79157.1|2e-145hypothetical protein B456_013G035500 [Gossypium raimondii]
JMSF016O08Sequence428013307 (3)ref|XP_009776380.1|1e-50PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Nicotiana sylve698012568 (2)gb|KJB79157.1|4e-127hypothetical protein B456_013G035500 [Gossypium raimondii]
JMSF031F16Sequence633013307 (3)ref|XP_009776380.1|3e-95PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Nicotiana sylve739024611ref|XP_004148832.1|9e-86PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Cucumis sativus

Alignment

This contig is upended


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JMSF031F16+                  TCCCAGCAATTCTTGAAGCTTCAATAATGTTTTCTAAATCGAATTCACTGTCA
                      ____________________________________________________________
consensus                    TCCCAGCAATTCTTGAAGCTTCAATAATGTTTTCTAAATCGAATTCACTGTCA
 
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JMSF031F16+           ATGTTTACAAAAACGCCTGCTTGGGCAGCTAGCACTAGATCCCCCAAGACTTTTCCATTT
                      ____________________________________________________________
consensus             ATGTTTACAAAAACGCCTGCTTGGGCAGCTAGCACTAGATCCCCCAAGACTTTTCCATTT
 
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JMSF031F16+           CCATTAAAGATACACCTGGTAGGATCAAAACCAGCATGGAGGGCCAACTTGAGCTCATTA
                      ____________________________________________________________
consensus             CCATTAAAGATACACCTGGTAGGATCAAAACCAGCATGGAGGGCCAACTTGAGCTCATTA
 
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JMSF031F16+           CCGCTAACCAAGACAGCCCCACAACCCAACTTCCTCAAGTGTTCCAAAATCTTAAGATTA
JMSF016O08+                                            CTCAAGTGTTCCAAAATCTTAAGATTA
                      ____________________________________________________________
consensus             CCGCTAACCAAGACAGCCCCACAACCCAACTTCCTCAAGTGTTCCAAAATCTTAAGATTA
 
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JMSF031F16+           TTATTGGCCTTAATCGCATAACCGATGATAGAATTCAAGCCCTCTAAAGCTTCCCTATAA
JMSF016O08+           TTATTGGCCTTAATCGCATAACCGATGATAGAATTCAAGCCCTCTAAAGCTTCCCTATAA
                      ____________________________________________________________
consensus             TTATTGGCCTTAATCGCATAACCGATGATAGAATTCAAGCCCTCTAAAGCTTCCCTATAA
 
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JMSF031F16+           GCCTCAACGTTTCTAGTGATTTGGGCCTTGCTATAAAGATAAAATGGTCTTTTTTCAACT
JMSF016O08+           GCCTCAACGTTTCTAGTGATTGGGGCCTTGCTATAAAGATAAAATGGTCTTTTTTCAACT
                      ____________________________________________________________
consensus             GCCTCAACGTTTCTAGTGATTTGGGCCTTGCTATAAAGATAAAATGGTCTTTTTTCAACT
 
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JMSF031F16+           GATTCCATAACATCCTGAACCTTGACTCCCTCGCAGTACAGGAACCCATCTTCTGATTTT
JMSF016O08+           GATTCCATAACATCCTGAACCTTGACTCCCTCGCAGTACAGGAACCCATCTTCTGATTTT
JMSF016A04+                          TGAACCTTGACTCCCTCGCAGTACAGGAACCCATCTTCTGATTTT
                      ____________________________________________________________
consensus             GATTCCATAACATCCTGAACCTTGACTCCCTCGCAGTACAGGAACCCATCTTCTGATTTT
 
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JMSF031F16+           GAAAAGCAGTGCTGAAACTTCTGGGTCTTTTGCTCTGAGGTGGAAATAACTGCCCTTGTG
JMSF016O08+           GAAAAGCAGTGCTGAAACTTCTGGGTCTTTTGCTCTGAGGTGGAAATAACTGCCCTTGTG
JMSF016A04+           GAAAAGCAGTGCTGAAACTTCTGGGTCTTTTGCTCTGAGGTGGAAATAACTGCCCTTGTG
                      ____________________________________________________________
consensus             GAAAAGCAGTGCTGAAACTTCTGGGTCTTTTGCTCTGAGGTGGAAATAACTGCCCTTGTG
 
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JMSF031F16+           ATCCGGCTTCTAGAAATGAGCTTGGGTGGGCAAATTGGTTTCAGGCAGAAATGTTTGGGA
JMSF016O08+           ATCCGGCTTCTAGAAATGAGCTTGGGTGGGCAAATTGGTTTCAGGCAGAAATGTTTGGGA
JMSF016A04+           ATCCGGCTTCTAGAAATGAGCTTGGGTGGGCAAATTGGTTTCAGGCAGAAATGTTTGGGA
                      ____________________________________________________________
consensus             ATCCGGCTTCTAGAAATGAGCTTGGGTGGGCAAATTGGTTTCAGGCAGAAATGTTTGGGA
 
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JMSF031F16+           GTTGAATTTGAAGTGTGCTTTAGGGACTTAGGAAGCGACAGGGAGTGAGAGACCAGGTGC
JMSF016O08+           GTTGAATTTGAAGTGTGCTTTAGGGACTTAGGAAGCGACAGGGAGTGAGAGACCAGGTGC
JMSF016A04+           GTTGAATTTGAAGTGTGCTTTAGGGACTTAGGAAGCGACAGGGAGTGAGAGACCAGGTGC
                      ____________________________________________________________
consensus             GTTGAATTTGAAGTGTGCTTTAGGGACTTAGGAAGCGACAGGGAGTGAGAGACCAGGTGC
 
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JMSF031F16+           GCAG-CGCCATTGATGGAGCAGAGTGAAGGTTTGGGAGCT                    
JMSF016O08+           GCAGCCGCCATTGATGGAGCAGAGTGAAGGTTTGGGAGCT                    
JMSF016A04+           GCAGCCGCCATTGATGGAGCAGAGTGAAGGTTTGGGAGCTGAGCTTCAAGTCTGCGTTGC
                      ____________________________________________________________
consensus             GCAGCCGCCATTGATGGAGCAGAGTGAAGGTTTGGGAGCTGAGCTTCAAGTCTGCGTTGC