Contig 013306:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN033B18Sequence618013306 (2)ref|XP_009616815.1|1e-73PREDICTED: mediator of RNA polymerase II transcription subunit 1 [Nicotiana tom
JMSF015P06Sequence463013306 (2)ref|XP_009616815.1|6e-47PREDICTED: mediator of RNA polymerase II transcription subunit 1 [Nicotiana tom762016069ref|XP_006367083.1|69.3PREDICTED: uncharacterized protein LOC102586934 [Solanum tuberosum]

Alignment

This contig is upended


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JMFN033B18+                       TTGCCACTCTATTATCCTTCTTGGAGGTTTTAACCTTTACTGCACTAT
                      ____________________________________________________________
consensus                         TTGCCACTCTATTATCCTTCTTGGAGGTTTTAACCTTTACTGCACTAT
 
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JMFN033B18+           CTAATGGCATTGACTNTAATGGAGTATGTCCAGCATCCTTTAATGATCTGTTAGAATGCC
                      ____________________________________________________________
consensus             CTAATGGCATTGACTNTAATGGAGTATGTCCAGCATCCTTTAATGATCTGTTAGAATGCC
 
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JMFN033B18+           CTAATAAACGCTTCTTTTGGCTTGTTATCTCGAGCCTCTTCATCCCTTCACACAGCTTTG
                      ____________________________________________________________
consensus             CTAATAAACGCTTCTTTTGGCTTGTTATCTCGAGCCTCTTCATCCCTTCACACAGCTTTG
 
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JMFN033B18+           TTAGAGGCATACGCAGCTCAACAGATTTCTTCAAACTGATAGCTTTCTTTGGAGAGGAGA
                      ____________________________________________________________
consensus             TTAGAGGCATACGCAGCTCAACAGATTTCTTCAAACTGATAGCTTTCTTTGGAGAGGAGA
 
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JMFN033B18+           ACGCGAGAGCCTTTGCCACCATCCGATTCTTTGGCACTGCAAGAGTGGTAGGTTTGGGAT
                      ____________________________________________________________
consensus             ACGCGAGAGCCTTTGCCACCATCCGATTCTTTGGCACTGCAAGAGTGGTAGGTTTGGGAT
 
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JMFN033B18+           TCTGAACACTCCGAAATGAATTTGCATCCGGAAGGCACTTTTTGCTCCTAGGAGTGGTAA
                      ____________________________________________________________
consensus             TCTGAACACTCCGAAATGAATTTGCATCCGGAAGGCACTTTTTGCTCCTAGGAGTGGTAA
 
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JMFN033B18+           GATATTTGGCTGCAACTTGCTTTGTTTTAGCCTTTGGAGTAGACATCGGATTTGTAGGAG
                      ____________________________________________________________
consensus             GATATTTGGCTGCAACTTGCTTTGTTTTAGCCTTTGGAGTAGACATCGGATTTGTAGGAG
 
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JMFN033B18+           GTTTAACTTTCTCTTTCTCATAACCCAATTTCCTGGAAATGGATGAAGCCACTGCTAATC
                      ____________________________________________________________
consensus             GTTTAACTTTCTCTTTCTCATAACCCAATTTCCTGGAAATGGATGAAGCCACTGCTAATC
 
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JMFN033B18+           TTGACACCACCCTGGGCTTCGAATATTTTGAGGGCACTGACATTGGGCACTTCATGTTTC
JMSF015P06+                            TTCGAATATTTTGAGGGCACTGACATTGGGCACTTCATGTTTC
                      ____________________________________________________________
consensus             TTGACACCACCCTGGGCTTCGAATATTTTGAGGGCACTGACATTGGGCACTTCATGTTTC
 
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JMFN033B18+           TTGAAGCATTTCTATTTAGTGCCTTTTGAAGCCTTACATTGGGACTTCTTGCTGCCATTA
JMSF015P06+           TTGAAGCATTTCTATTTAGTGCCTTTTGAAGCCTTACATTGGGACTTCTTGCTGCCATTA
                      ____________________________________________________________
consensus             TTGAAGCATTTCTATTTAGTGCCTTTTGAAGCCTTACATTGGGACTTCTTGCTGCCATTA
 
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JMFN033B18+           CCCGAAGAACGAAATCCTTGTAGATTCTCT                              
JMSF015P06+           CCCGAAGAACGAAATCCTTGTAGATTCTCTCCGAGTCCATCTCTTCTTCATGTTTTTCCT
                      ____________________________________________________________
consensus             CCCGAAGAACGAAATCCTTGTAGATTCTCTCCGAGTCCATCTCTTCTTCATGTTTTTCCT
 
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JMSF015P06+           CACATCCAACACGGAGGCAGAACCAGTAGTGATCGTCGGGGCGGAAATGATCCGGAGCGG
                      ____________________________________________________________
consensus             CACATCCAACACGGAGGCAGAACCAGTAGTGATCGTCGGGGCGGAAATGATCCGGAGCGG
 
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JMSF015P06+           TGAAATCGACGAACTTAGGAGCCTCGATCCTCTCGTAGAACTCCTCGTCTTCTCCGGTGT
                      ____________________________________________________________
consensus             TGAAATCGACGAACTTAGGAGCCTCGATCCTCTCGTAGAACTCCTCGTCTTCTCCGGTGT
 
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JMSF015P06+           CCATACTGCTCCCGCCGCTACCGCTGCAAATGGACTCCGGCAGTGAAGCGGATCGGATTC
                      ____________________________________________________________
consensus             CCATACTGCTCCCGCCGCTACCGCTGCAAATGGACTCCGGCAGTGAAGCGGATCGGATTC
 
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JMSF015P06+           CGAGTTCCTTCACCATTTCCGGCTGTGCTGTGCGGTGCGGTGGAGCGTCGCAACGGCTTC
                      ____________________________________________________________
consensus             CGAGTTCCTTCACCATTTCCGGCTGTGCTGTGCGGTGCGGTGGAGCGTCGCAACGGCTTC
 
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JMSF015P06+           TGCGAGTGCGTGAGAGAGAGTGAGGAAGAAGAGCGTTTGGTGAATGCTTTGTTGTAGACC
                      ____________________________________________________________
consensus             TGCGAGTGCGTGAGAGAGAGTGAGGAAGAAGAGCGTTTGGTGAATGCTTTGTTGTAGACC