Contig 013282:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011O20Sequence242013282 (3)733002999 (4)gb|EYU27532.1|6e-15hypothetical protein MIMGU_mgv1a003642mg [Erythranthe guttata]
JMSF015P07Sequence475013282 (3)ref|XP_009764172.1|9e-53PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic797002999 (4)ref|XP_009397366.1|2e-22PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic
JMSF048L22Sequence673013282 (3)ref|XP_011030727.1|1e-22PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic692002999 (4)ref|XP_011095678.1|6e-11PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic

Alignment

This contig is upended


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JMSF015P07+                             CTCTTCCCTCCTTGCATAGCCCCGTCAACACAACATTGTAAT
                      ____________________________________________________________
consensus                               CTCTTCCCTCCTTGCATAGCCCCGTCAACACAACATTGTAAT
 
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JMSF015P07+           TTTCCAAAGTAGGCTTATCACCATTGGCAACTATGTTTTCCAAGAGAACCATAGCCTCAT
                      ____________________________________________________________
consensus             TTTCCAAAGTAGGCTTATCACCATTGGCAACTATGTTTTCCAAGAGAACCATAGCCTCAT
 
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JMSF015P07+           CAACCCCCCTCTCGATATAAGTAGCTTGAAGCAAGACCGTATAAGTATATGAATCCGGGA
                      ____________________________________________________________
consensus             CAACCCCCCTCTCGATATAAGTAGCTTGAAGCAAGACCGTATAAGTATATGAATCCGGGA
 
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JMSF015P07+           CCAATCCTTTTTGCATCAACCTATCGATAAACTGGAGGCTAAGAGTCAACTTCCCTCGAT
                      ____________________________________________________________
consensus             CCAATCCTTTTTGCATCAACCTATCGATAAACTGGAGGCTAAGAGTCAACTTCCCTCGAT
 
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JMSF015P07+           ACAAAGCCCTCTTACAAGACAATTATAGGTCACATTATCCGCGGTGTACCCATACTCCTC
                      ____________________________________________________________
consensus             ACAAAGCCCTCTTACAAGACAATTATAGGTCACATTATCCGCGGTGTACCCATACTCCTC
 
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JMSF015P07+           CATCTTTTCGACTAATTGCATCGCATGCCCAACACTTCCTTTCTTGCACAAGACATTCAC
                      ____________________________________________________________
consensus             CATCTTTTCGACTAATTGCATCGCATGCCCAACACTTCCTTTCTTGCACAAGACATTCAC
 
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JMSF015P07+           CAAGAAAGTGTAAGACCTAGCATCTGGGATACTCCCAGACCTACCCATCACTTCTATAAC
JMSF048L22+                                  CTGGGATACTCCCAGACCTACCCATCACTTCTATAAC
                      ____________________________________________________________
consensus             CAAGAAAGTGTAAGACCTAGCATCTGGGATACTCCCAGACCTACCCATCACTTCTATAAC
 
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JMSF015P07+           TCTGCTCGCTTTTCCGGGCTTATTTCGTTGGCAAAGAGCACAAACCAGGTCAGTAGCCTG
JMSF048L22+           TCTGCTCGCTTTTCCGGGCTTATTTCGTTGGCAAAGAGCACAAACCAGGTCAGTAGCCTG
                      ____________________________________________________________
consensus             TCTGCTCGCTTTTCCGGGCTTATTTCGTTGGCAAAGAGCACAAACCAGGTCAGTAGCCTG
 
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JMSF015P07+           GGCTAAATCAGGC                                               
JMSF048L22+           GGCTAAATCAGGCTTATAACCCTTCTTTGCCATATTCTCTAAATAGATAACTGCATCAAA
                      ____________________________________________________________
consensus             GGCTAAATCAGGCTTATAACCCTTCTTTGCCATATTCTCTAAATAGATAACTGCATCAAA
 
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JMSF048L22+           TAGCTTATGTTCTTTGGTTCTTTGGTAATTCCAGTTGGGAAGAACAATAACACCACCCTT
                      ____________________________________________________________
consensus             TAGCTTATGTTCTTTGGTTCTTTGGTAATTCCAGTTGGGAAGAACAATAACACCACCCTT
 
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JMSF048L22+           CACGGCTAAGCCGCTCTGCTGCTTCTTAGAAGAATTAGCAATACGGGCCTGGGCAACGGC
                      ____________________________________________________________
consensus             CACGGCTAAGCCGCTCTGCTGCTTCTTAGAAGAATTAGCAATACGGGCCTGGGCAACGGC
 
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JMSF048L22+           TAATACTCTAGGAAGCCTCTTCTTTCGCAGCAAGGAATGATAAAGTTTGGGCCTTTCGGG
                      ____________________________________________________________
consensus             TAATACTCTAGGAAGCCTCTTCTTTCGCAGCAAGGAATGATAAAGTTTGGGCCTTTCGGG
 
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JMSF048L22+           CAATAATTCACAGGGTTTTCTTGCGAGATCCGGAGATGGGTTTGTTAATGGAGGCGATGA
                      ____________________________________________________________
consensus             CAATAATTCACAGGGTTTTCTTGCGAGATCCGGAGATGGGTTTGTTAATGGAGGCGATGA
 
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JMSF048L22+           ATTTATAAGCATAGTCATGAATTGAACAGTTTCGTGAAAGAAACAAATAAACAATTCCTT
JMSF011O20+                                                                     TT
                      ____________________________________________________________
consensus             ATTTATAAGCATAGTCATGAATTGAACAGTTTCGTGAAAGAAACAAATAAACAATTCCTT
 
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JMSF048L22+           ATCTCCAGAATTTTGACAAGACAAGAAACTTCATATGAAGTTATGGTTGAGCATTTAAAG
JMSF011O20+           ATCTCCAGAATTTTGACAAGACAAGAAACTTCATATGAAGTTATGGTTGAGCATTTAAAG
                      ____________________________________________________________
consensus             ATCTCCAGAATTTTGACAAGACAAGAAACTTCATATGAAGTTATGGTTGAGCATTTAAAG
 
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JMSF048L22+           ATTAAAAGATGCAGGAAATCAAGAAAGAGATTAAAGGGAAGATGAAATGGAAATGGAGCT
JMSF011O20+           ATTAAAAGATGCAGGAAATCAAGAAAGAGATTAAAGGGAAGATGAAATGGAAATGGAGCT
                      ____________________________________________________________
consensus             ATTAAAAGATGCAGGAAATCAAGAAAGAGATTAAAGGGAAGATGAAATGGAAATGGAGCT
 
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JMSF048L22+           AAGGAGGAACATACAGTAGAGTAGAGTGAGCCTTCTTTACTTTCTTCTTCTCCAAGTGAG
JMSF011O20+           AAGGAGGAACATACAGTAGAGTAGAGTGAGCCTTCTTTACTTTCTTCTTCTCCAAGTGAG
                      ____________________________________________________________
consensus             AAGGAGGAACATACAGTAGAGTAGAGTGAGCCTTCTTTACTTTCTTCTTCTCCAAGTGAG
 
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JMSF048L22+           GAAAAGGATTGGGTGTAGCGCTATCATCATCTTGT                         
JMSF011O20+           GAAAAGGATTGGGTGTAGCGCTATCATCATCTTGTGACTGCAACTCCGGAAGTTATCTCC
                      ____________________________________________________________
consensus             GAAAAGGATTGGGTGTAGCGCTATCATCATCTTGTGACTGCAACTCCGGAAGTTATCTCC