Contig 013272:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005M09Sequence507013272 (5)ref|XP_010318446.1|3e-80PREDICTED: 26S protease regulatory subunit 7 homolog A isoform X2 [Solanum lyco729004100 (9)emb|CAN80220.1|4e-120hypothetical protein VITISV_027893 [Vitis vinifera]
JMFF011A13Sequence513013272 (5)gb|KDO53742.1|2e-116hypothetical protein CISIN_1g014332mg [Citrus sinensis]729004100 (9)emb|CAN80220.1|2e-106hypothetical protein VITISV_027893 [Vitis vinifera]
JMFF042L18Sequence645013272 (5)ref|XP_010318446.1|2e-112PREDICTED: 26S protease regulatory subunit 7 homolog A isoform X2 [Solanum lyco612004100 (9)emb|CAN80220.1|4e-68hypothetical protein VITISV_027893 [Vitis vinifera]
JMSF009B23Sequence268013272 (5)ref|XP_006493392.1|3e-54PREDICTED: 26S protease regulatory subunit 7-like [Citrus sinensis]770004100 (9)gb|ABR25957.1|1e-13226S protease regulatory subunit 7 [Oryza sativa Indica Group]
JMSF011A09Sequence202013272 (5)ref|XP_010318446.1|3e-17PREDICTED: 26S protease regulatory subunit 7 homolog A isoform X2 [Solanum lyco779004100 (9)gb|ACU19621.1|5e-135unknown [Glycine max]

Alignment

This contig is upended


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JMFF011A13+                                  TATTAGCCACTGCCCTAGCCAGTAGTGTTTTCCCTGT
                      ____________________________________________________________
consensus                                    TATTAGCCACTGCCCTAGCCAGTAGTGTTTTCCCTGT
 
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JMFF011A13+           TCCAGGAGGACCATAGCAAAGAACACCNTTAGGTGGGTCAATTCCGAGCTTCACAAACTT
                      ____________________________________________________________
consensus             TCCAGGAGGACCATAGCAAAGAACACCNTTAGGTGGGTCAATTCCGAGCTTCACAAACTT
 
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JMFF011A13+           TTCTGGGTGGAGCATTGGCAGTTCAACCACCTCTCGCATCTTTTCAATTTGTTCCTTGCA
JMFF042L18+                         TTGGCAGTTCAACCACCTCTCGCATCTNTTCAATTTGTTCCTTGCA
                      ____________________________________________________________
consensus             TTCTGGGTGGAGCATTGGCAGTTCAACCACCTCTCGCATCTTTTCAATTTGTTCCTTGCA
 
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JMFF011A13+           TCCACCAACATCATTGTAGGTCACATCAGGCTTTTCCTCAACTGTCATCATGGTGACACT
JMFF042L18+           TCCACCAACATCATNGTAGGTCACATCAGGCTTTTCCTCAACTGTCATCATGGTGACACT
                      ____________________________________________________________
consensus             TCCACCAACATCATTGTAGGTCACATCAGGCTTTTCCTCAACTGTCATCATGGTGACACT
 
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JMFF011A13+           TGGATCAATTTTGGGAGGCAAAGGAATCTGGATTTGATATTTATTCCGATCAACTCCAAC
JMFF042L18+           TGGATCAATTTTGGGAGGCAAAGGAATCTGGATNTGATATTTATTCCGATCAACTCCAAC
JMSF009B23+                                                       TCCGATCAACTCCAAC
JMFF005M09+                                             TGATATTTATTCCGATCAACTCCAAC
                      ____________________________________________________________
consensus             TGGATCAATTTTGGGAGGCAAAGGAATCTGGATTTGATATTTATTCCGATCAACTCCAAC
 
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JMFF011A13+           TCGCATGCCCTCTTCAATATCAGTTGGTGAAACTTTGTCACCCAATCCAACAACAAACTT
JMFF042L18+           TCGCATGCCCTCTTCAATATCAGTTGGTGAAACTTTGTCACCCAATCCAACAACAAACTT
JMSF009B23+           TCGCATGCCCTCTTCAATATCAGTTGGTGAAACTTTGTCACCCAATCCAACAACAAACTT
JMFF005M09+           TCGCATGCCCTCTTCAATATCAGTTGGTGAAACTTTGTCACCCAATCCAACAACAAACTT
                      ____________________________________________________________
consensus             TCGCATGCCCTCTTCAATATCAGTTGGTGAAACTTTGTCACCCAATCCAACAACAAACTT
 
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JMFF011A13+           TGCTATTTGCTTCACATTTATCACATATTTTGCATCTTCAGTATTAGGACTGATTATTTT
JMFF042L18+           TGCTATTTGCTTCACATTTATCACATATTTTGCATCTTCAGTATTAGGACTGATTATTTT
JMSF009B23+           TGCTATTTGCTTCACATTTATCACATATTTTGCATCTTCAGTATTAGGACTGATTATTTT
JMFF005M09+           TGCTATTTGCTTCACATTTATCACATATTTTGCATCTTCAGTATTAGGACTGATTATTTT
                      ____________________________________________________________
consensus             TGCTATTTGCTTCACATTTATCACATATTTTGCATCTTCAGTATTAGGACTGATTATTTT
 
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JMFF011A13+           TGTACATCTTGCCACCTGAAGGGGTTGCTCCTCCTGCATCATTTGCTTATCAGAAACCAA
JMFF042L18+           TGTACATCTTGCCACCTGAAGGGGTTGCTCCTCCTGCATCATTTGCTTATCAGAAACCAA
JMSF009B23+           TGTACATCTTGCCACCTGAAGGGGTTGCTCCTCCTGCATCATTTGCTTATCAGAAACCAA
JMFF005M09+           TGTACATCTTGCCACCTGAAGGGGTTGCTCCTCCTGCATCATTTGCTTATCAGAAACCAA
                      ____________________________________________________________
consensus             TGTACATCTTGCCACCTGAAGGGGTTGCTCCTCCTGCATCATTTGCTTATCAGAAACCAA
 
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JMFF011A13+           ATCCCATTGGCTTGGTGCAGCTAAGCCAGTGTCAGATTCCTTAATACCACATAAAT    
JMFF042L18+           ATCCCATTGGCTTGGTGCAGCTAAGCCAGTGTCAGATTCCTTAATACCACATAAATCATT
JMSF009B23+           ATCCCATTGGCTTGGTGCAGCTAAGCCAGTGTCAGATTCCTTAATACCACATAAATCATT
JMFF005M09+           ATCCCATTGGCTTGGTGCAGCTAAGCCAGTGTCAGATTCCTTAATACCACATAAATCATT
                      ____________________________________________________________
consensus             ATCCCATTGGCTTGGTGCAGCTAAGCCAGTGTCAGATTCCTTAATACCACATAAATCATT
 
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JMFF042L18+           AATCTTTTTAGCCATTTCCTTGATTTCCTTTTCAGCTTTCTTTATGCTTGTTGAATAAGG
JMSF009B23+           AATCTTTTTAGC                                                
JMFF005M09+           AATCTTTTTAGCCATTTCCTTGATTTCCTTTTCAGCTTTCTTTATGCTTGTTGAATAAGG
JMSF011A09+                                                 TCTTTATGCTTGTTGAATAAGG
                      ____________________________________________________________
consensus             AATCTTTTTAGCCATTTCCTTGATTTCCTTTTCAGCTTTCTTTATGCTTGTTGAATAAGG
 
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JMFF042L18+           TCCCAGACCATATGTCTTAAGGAGAGCAATATCGTCCTCATCGAGCGGCCTAGGGTTCTT
JMFF005M09+           TCCCAGACCATATGTCTTAAGGAGAGCAATATCGTCCTCATCGAGCGGCCTAGGGTTCTT
JMSF011A09+           TCCCAGACCATATGTCTTAAGGAGAGCAATATCGTCCTCATCGAGCGGCCTAGGGTTCTT
                      ____________________________________________________________
consensus             TCCCAGACCATATGTCTTAAGGAGAGCAATATCGTCCTCATCGAGCGGCCTAGGGTTCTT
 
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JMFF042L18+           CTCGTCCTTGATCTCATCCTCCACATCCCGGGCGGGTGCCATGCTTCCGAGATTCCTTTC
JMFF005M09+           CTCGTCCTTGATCTCATCCTCCACATCCCGGGCGGGTGCCATGCTTCCGAGATTCCTTTC
JMSF011A09+           CTCGTCCTTGATCTCATCCTCCACATCCCGGGCGGGTGCCATGCTTCCGAGATTCCTTTC
                      ____________________________________________________________
consensus             CTCGTCCTTGATCTCATCCTCCACATCCCGGGCGGGTGCCATGCTTCCGAGATTCCTTTC
 
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JMFF042L18+           TTCTTCTTCTCTTCTTCCTCCTAACAATCGCAGAGTTGAGAAAGTTTGGAGAACAA    
JMFF005M09+           TTCTTCTTCTCTTCTTCCTCCTAACAATCGCAGAGTTGAGAAAGTTTGGAGAACAA    
JMSF011A09+           TTCTTCTTCTCTTCTTCCTCCTAACAATCGCAGAGTTGAGAAAGTTTGGAGAACAAGCCC
                      ____________________________________________________________
consensus             TTCTTCTTCTCTTCTTCCTCCTAACAATCGCAGAGTTGAGAAAGTTTGGAGAACAAGCCC