Contig 013255:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030F04Sequence381013255 (6)ref|XP_009599866.1|3e-60PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform741001134 (7)gb|ABR25526.1|2e-12026S protease regulatory subunit 8 [Oryza sativa Indica Group]
JMFF030F15Sequence174013255 (6)ref|XP_006338168.1|9e-12PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Solanum tuberosum]698001134 (7)gb|ABR25526.1|2e-11526S protease regulatory subunit 8 [Oryza sativa Indica Group]
JMFF048K18Sequence440013255 (6)ref|XP_009599866.1|1e-58PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform253001134 (7)gb|EAZ01563.1|3e-04hypothetical protein OsI_23594 [Oryza sativa Indica Group]
JMSF009G10Sequence466013255 (6)ref|XP_009599866.1|6e-69PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform709001134 (7)gb|ABR25526.1|1e-13026S protease regulatory subunit 8 [Oryza sativa Indica Group]
JMSF020I20Sequence663013255 (6)ref|XP_006338168.1|3e-105PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Solanum tuberosum]773001134 (7)ref|XP_006287833.1|4e-149hypothetical protein CARUB_v10001052mg [Capsella rubella] gb|EOA20731.1| hypothe
JMSF044E23Sequence798013255 (6)ref|XP_009599866.1|1e-134PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform778001134 (7)gb|ABR25526.1|1e-12926S protease regulatory subunit 8 [Oryza sativa Indica Group]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E23+                                                              GCCAGAAAC
                      ____________________________________________________________
consensus                                                                GCCAGAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044E23+           CCNTNATGAAGGTACAATCAGTATGATGTGCAACAGCTCTTGCCAACAGTGTTTTCCCAG
                      ____________________________________________________________
consensus             CCNTNATGAAGGTACAATCAGTATGATGTGCAACAGCTCTTGCCAACAGTGTTTTCCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+                                                              TCTCAAATA
JMSF044E23+           TTCCTGGAGGTCCATAAAGCAGTACTCCCTTTGGTTGGGCAATTCCAAGACTCTCAAATA
                      ____________________________________________________________
consensus             TTCCTGGAGGTCCATAAAGCAGTACTCCCTTTGGTTGGGCAATTCCAAGACTCTCAAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+           ATTCAGGGTGTTTAATAGGAAGCTCAATAACCTCCTTAATCTCCTTGATTTGTTGATCAA
JMSF044E23+           ATTCAGGGTGTTTAATAGGAAGCTCAATAACCTCCTTAATCTCCTTGATTTGTTGATCAA
                      ____________________________________________________________
consensus             ATTCAGGGTGTTTAATAGGAAGCTCAATAACCTCCTTAATCTCCTTGATTTGTTGATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+           GACCACCAATCATATCATAAGTAGAATCAGGAACTTTTTCAACTTTCATAAGGTTGACTA
JMSF044E23+           GACCACCAATCATATCATAAGTAGAATCAGGAACTTTTTCAACTTTCATAAGGTTGACTA
                      ____________________________________________________________
consensus             GACCACCAATCATATCATAAGTAGAATCAGGAACTTTTTCAACTTTCATAAGGTTGACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+           AAGGATCCACTTTGCTAGGTAAAATCAAATGGAGAACATAGCTATCGTTGCGAAGAGCAA
JMSF044E23+           AAGGATCCACTTTGCTAGGTAAAATCAAATGGAGAACATAGCTATCGTTGCGAAGAGCAA
JMSF009G10+                            GGTAAAATCAAATGGAGAACATAGCTATCGTTGCGAAGAGCAA
                      ____________________________________________________________
consensus             AAGGATCCACTTTGCTAGGTAAAATCAAATGGAGAACATAGCTATCGTTGCGAAGAGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+           CCCTGGTTGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAATGTCAACAACATATT
JMFF048K18+                                  GTTATGTCAAGGCTCTANTCAATGTCAACAACATATT
JMSF044E23+           CCCTGGTTGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAATGTCAACAACATATT
JMFF030F04+                                       GTCAATGCTNTTATCAATGTCAACAACATATT
JMSF009G10+           CCCTGGTTGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAATGTCAACAACATATT
                      ____________________________________________________________
consensus             CCCTGGTTGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAATGTCAACAACATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+           TGCCTTCAGGATGTACTTTAACCAAAACTTTTGACTTCCCCATCACTTTGACAACTTCAC
JMFF048K18+           TGCCTTCAGGATGTACTTTAACCAAAACTTTTGACTTCCCCATCACTTTGACAACTTCAC
JMSF044E23+           TGCCTTCAGGATGTACTTTAACCAAAACTTTTGACTTCCCCATCACTTTGACAACTTCAC
JMFF030F04+           TGCCTTCAGGATGTACTTTAACCAAAACTTTTGACTTCCCCATCACTTTGACAACTTCAC
JMSF009G10+           TGCCTTCAGGATGTACTTTAACCAAAACTTTTGACTTCCCCATCACTTTGACAACTTCAC
                      ____________________________________________________________
consensus             TGCCTTCAGGATGTACTTTAACCAAAACTTTTGACTTCCCCATCACTTTGACAACTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+           CGACATAAGATCCAGGCTCCTGAAGCAGTTGTAACTCTTCCTTCAACATTCTCACTTTAG
JMFF048K18+           CGACATAAGATCCAGGCTCCTGAAGCAGTTGTAACTCTTCCTTCAACATTCTCACTTTAG
JMSF044E23+           CGACATAAGATCCAGGCTCCTGAAGCAGTTGTAACTCTTCCTTCAACATTCTCACTTTAG
JMFF030F04+           CGACATAAGATCCAGGCTCCTGAAGCAGTTGTAACTCTTCCTTCAACATTCTCACTTTAG
JMSF009G10+           CGACATAAGATCCAGGCTCCTGAAGCAGTTGTAACTCTTCCTTCAACATTCTCACTTTAG
                      ____________________________________________________________
consensus             CGACATAAGATCCAGGCTCCTGAAGCAGTTGTAACTCTTCCTTCAACATTCTCACTTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+           AATTGAGCTCGTTACGCTGGGCTTCGAGCCGATTGAGATTATGACCCTTTTGGCGGACTT
JMFF048K18+           AATTGAGCTCGTTACGCTGGGCTTCGAGCCGATTGAGATTATGACCCTTTTGGCGGACTT
JMSF044E23+           AATTGAGCTCGTTACGCTGGGCTTCGAGCCGATTGAGATTATGACCCTTTTGGCGGACTT
JMFF030F04+           AATTGAGCTCGTTACGCTGGGCTTCGAGCCGATTGAGATTATGACCCTTTTGGCGGACTT
JMFF030F15+                                                                  GACTT
JMSF009G10+           AATTGAGCTCGTTACGCTGGGCTTCGAGCCGATTGAGATTATGACCCTTTTGGCGGACTT
                      ____________________________________________________________
consensus             AATTGAGCTCGTTACGCTGGGCTTCGAGCCGATTGAGATTATGACCCTTTTGGCGGACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+           GGAGTTGGAGATCGTGGATGTGCTGCATGTAGTACTGCTTCAGGCCTTCACCTTGCTTCA
JMFF048K18+           GGAGTTGGAGATCGTGGATGTGCTGCATGTAGTACTGCTTCAGGCCTTCACCTTGCTTCA
JMSF044E23+           GGAGTTGGAGATCGTGGATGTGCTGCATGTAGTACTGCTTCAGGCCTTCACCTTGCTTCA
JMFF030F04+           GGAGTTGGAGATCGTGGATGTGCTGCATGTAGTACTGCTTCAGGCCTTCACCTTGCTTCA
JMFF030F15+           GGAGTNGGAGATCGTGGATGTGNTGCATGTAGTACTGCTTCAGGCCTTCACCTTGNTTCA
JMSF009G10+           GGAGTTGGAGATCGTGGATGTGCTGCATGTAGTACTGCTTCAGGCCTTCACCTTGCTTCA
                      ____________________________________________________________
consensus             GGAGTTGGAGATCGTGGATGTGCTGCATGTAGTACTGCTTCAGGCCTTCACCTTGCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF020I20+           TCGGCTTCGCTGAACAGCTATCTTCTCTCCCTGATTCGG                     
JMFF048K18+           TCGGCTTCGCTGAACAGCTATCTTCTCTCCCTGATTCGG                     
JMSF044E23+           TCGGCTTCGCTGAACAGCTATCTTCTCTCCCTGATTCGG                     
JMFF030F04+           TCGGCTTCGCTGAACAGCTATCTTCTCTCCCTGATTCGGTTGTGCTCTTTCTCACCTCCA
JMFF030F15+           TCGGCTTCGCTGAACAGCTATCTTCTCTCCCTGATTCGGTTGTGCTCTTTCTCACCTCCA
JMSF009G10+           TCGGCTTCGCTGAACAGCTATCTTCTCTCCCTGATTCGGTTGTGCTCTTTCTCACCTCCA
                      ____________________________________________________________
consensus             TCGGCTTCGCTGAACAGCTATCTTCTCTCCCTGATTCGGTTGTGCTCTTTCTCACCTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF030F04+           CCGTCGCCATTCTTTGATCGCGGGTTTAGGGTTTCTAATCACAATCCAC           
JMFF030F15+           CCGTCGCCATTCTTTGATCGCGGGTTTAGGGTTTCTAATCACAATCCAC           
JMSF009G10+           CCGTCGCCATTCTTTGATCGCGGGTTTAGGGTTTCTAATCACAATCCACAGTTTTTCGGC
                      ____________________________________________________________
consensus             CCGTCGCCATTCTTTGATCGCGGGTTTAGGGTTTCTAATCACAATCCACAGTTTTTCGGC