Contig 013236:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020G21Sequence166013236 (7)262006879 (5)ref|XP_008237176.1|1e-14PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like
JMFF036O06Sequence611013236 (7)emb|CDO97460.1|1e-88unnamed protein product [Coffea canephora]775022373ref|XP_008237176.1|7e-105PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like
JMFS013D04Sequence600013236 (7)emb|CDO97460.1|9e-60unnamed protein product [Coffea canephora]
JMSF003D17Sequence284003521 (4)696013236 (7)ref|XP_009592510.1|9e-11PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis]
JMSF003E17Sequence446003521 (4)emb|CDO97460.1|2e-09unnamed protein product [Coffea canephora]730013236 (7)ref|XP_009592510.1|1e-10PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis]
JMSF006I02Sequence396013236 (7)ref|XP_003524744.1|1e-14PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like 453006879 (5)ref|XP_010676904.1|1e-39PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like
JMSF043H23Sequence501003521 (4)emb|CDO97460.1|7e-10unnamed protein product [Coffea canephora]729013236 (7)ref|XP_009592510.1|1e-10PREDICTED: protein IQ-DOMAIN 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF043H23- G
rJMSF003E17- TATTGAATTACAAGGGATGTAATGTGATACAAATGATTAATATTAAATAAGG
rJMSF003D17- G
                      ____________________________________________________________
consensus TATTGAATTACAAGGGATGTAATGTGATACAAATGATTAATATTAAATAAGG
 
. : . : . : . : . : . :
rJMSF043H23- TCAAACTAGACACGAGAATATATACAATTCTATGCACATAAAGATTGGTAACAATTATCA
rJMSF003E17- TCAAACTAGACACGAGAATATATACAATTCTATGCACATAAAGATTGGTAACAATTATCA
rJMSF003D17- TCAAACTAGACACGAGAATATATACAATTCTATGCACATAAAGATTGGTAACAATTATCA
                      ____________________________________________________________
consensus TCAAACTAGACACGAGAATATATACAATTCTATGCACATAAAGATTGGTAACAATTATCA
 
. : . : . : . : . : . :
rJMSF043H23- TCTTCATCAAAACTATTGAGGTCAACACTTTGGAAGTCCTTTGTCTTGGGGAGAAGGTCC
rJMSF003E17- TCTTCATCAAAACTATTGAGGTCAACACTTTGGAAGTCCTTTGTCTTGGGGAGAAGGTCC
rJMSF003D17- TCTTCATCAAAACTATTGAGGTCAACACTTTGGAAGTCCTTTGTCTTGGGGAGAAGGTCC
                      ____________________________________________________________
consensus TCTTCATCAAAACTATTGAGGTCAACACTTTGGAAGTCCTTTGTCTTGGGGAGAAGGTCC
 
. : . : . : . : . : . :
rJMSF043H23- GATTTGATGAGTACATCTAGATATGCAATAATTCCCTTCAAATGTTGGTATGCCCCTCGA
rJMSF003E17- GATTTGATGAGTACATCTAGATATGCAATAATTCCCTTCAAATGTTGGTATGCCCCTCGA
rJMSF003D17- GATTTGATGAGTACATCTAGATATGCAATAATTCCCTTCAAATGTTGGTATGCCCCTCGA
                      ____________________________________________________________
consensus GATTTGATGAGTACATCTAGATATGCAATAATTCCCTTCAAATGTTGGTATGCCCCTCGA
 
. : . : . : . : . : . :
rJMSF043H23- GTTCCTGTCTCATTGAAATTGGATAGTCATGCCATTTCATCCACTGAAGCCTCTTGAACC
rJMSF003E17- GTTCCTGTCTCATTGAAATTGGATAGTCATGCCATTTCATCCACTGAAGCCTCTTGAACC
rJMSF003D17- GTTCCTGTCTCATTGAAATTGGATAGTCATGCCATTTCATCCACTGAAGCCTCTTGAACC
                      ____________________________________________________________
consensus GTTCCTGTCTCATTGAAATTGGATAGTCATGCCATTTCATCCACTGAAGCCTCTTGAACC
 
. : . : . : . : . : . :
rJMSF043H23- AGAAATCCTTTAAAAGCTGTTTGAATGCATATGACTGCCCATTCTTCTCTCATACTCTTT
rJMSF003E17- AGAAATCCTTTAAAAGCTGTTTGAATGCATATGACTGCCCATTCTTCTCTCATACTCTTT
rJMSF003D17- AGAAATCCTTTAAAAGCTGTTTGAATGCATATGACTGCCCATTCTTCTCTCATACTCTTT
                      ____________________________________________________________
consensus AGAAATCCTTTAAAAGCTGTTTGAATGCATATGACTGCCCATTCTTCTCTCATACTCTTT
 
. : . : . : . : . : . :
rJMSF043H23- TGAATTTGAGCTGCATCCTCCAATTGGTGTGAGCATGAAGGTGAACCAACAGCAACCGGA
rJMSF003E17- TGAATTTGAGCTGCATCCTCCAATTGGTGTGAGCATGAAGGTGAACCAACAGCAACCGGA
rJMSF003D17- TGAATTTGAGCTGCATCCTCCAATTGGTGTGAGCATGAAGGTGAACCANCAGCAACCGGA
                      ____________________________________________________________
consensus TGAATTTGAGCTGCATCCTCCAATTGGTGTGAGCATGAAGGTGAACCAACAGCAACCGGA
 
. : . : . : . : . : . :
rJMSF043H23- GCTGAAGATACTTTGAAATCTTCAACTGATGTAGAAGCATTATCATTACGACTGAACTCA
rJMSF003E17- GCTGAAGATACTTTGAAATCTTCAACTGATGTAGAAGCATTATCATTACGACTGAACTCA
rJMSF003D17- GCTGAAGATACTTTGAAATCTTCAACTGATGTAGAAGCATTATCATTACGACTGAACTCA
                      ____________________________________________________________
consensus GCTGAAGATACTTTGAAATCTTCAACTGATGTAGAAGCATTATCATTACGACTGAACTCA
 
. : . : . : . : . : . :
rJMSF043H23- ACTCTGAATTAGATCACTATCAATCTCA
rJMSF003E17- ACTCTGAATTAGATCACTATCAATCTCA
rJMSF003D17- ACTCTGAATTAGATCACTATCAATCTCAGTTGCAAGTGATTTCTCAGGTCCTTCCAAACC
                      ____________________________________________________________
consensus ACTCTGAATTAGATCACTATCAATCTCAGTTGCAAGTGATTTCTCAGGTCCTTCCAAACC
 
. : . : . : . : . : . :
rJMSF003D17- AATCAGTGACATAATCCACTTCCCTGAAACTCCATTGGCAAAGTTGCTTCAGCTCTACCA
                      ____________________________________________________________
consensus AATCAGTGACATAATCCACTTCCCTGAAACTCCATTGGCAAAGTTGCTTCAGCTCTACCA
 
. : . : . : . : . : . :
rJMSF003D17- ACCTCAAACCTTAGGTACACAAATTCCTTCTTGTCTGACTTCAATAACATTACCATGAGA
JMFF036O06+ AACCTTAGGTGCACCAATTCCTTCTTGTCTGACTTCAATAACATTACCATGAGA
JMFS013D04+ ATTACCATGAGA
                      ____________________________________________________________
consensus ACCTCAAACCTTAGGTGCACCAATTCCTTCTTGTCTGACTTCAATAACATTACCATGAGA
 
. : . : . : . : . : . :
rJMSF003D17- ATCAATTCTTTTCATGAATATATCATGTC
JMFF036O06+ ATTAATTCTTTTCATGAATATATCATGTCTTATGTCAAGATGTTGCTCTCCACTAATATC
JMFS013D04+ ATTAATTCTTTTCATGAATATATCATGTCTTATGTCAAGATGTTGCTCTCCACTAATATC
                      ____________________________________________________________
consensus ATTAATTCTTTTCATGAATATATCATGTCTTATGTCAAGATGTTGCTCTCCACTAATATC
 
. : . : . : . : . : . :
JMFF036O06+ CATGGCATCTACACTAAGTAACGAACACCTGATGGCCGGAAAGGTGACATCAAAATTGAT
JMFS013D04+ CATGGCATCTACACTAAGTAACGAACACCTGATGGCCGGAAAGGTGACATCAAAATTGAT
                      ____________________________________________________________
consensus CATGGCATCTACACTAAGTAACGAACACCTGATGGCCGGAAAGGTGACATCAAAATTGAT
 
. : . : . : . : . : . :
JMFF036O06+ ATGCAATTTTTCTCCTCTTGAAGTGTCTACAATAAGCCTAGTCTCAGTAACAGTATGGAG
JMFS013D04+ ATGCAATTTTTCTCCTCTTGAAGTGTCTACAATAAGCCTAGTCTCAGTAACAGTATGGAG
                      ____________________________________________________________
consensus ATGCAATTTTTCTCCTCTTGAAGTGTCTACAATAAGCCTAGTCTCAGTAACAGTATGGAG
 
. : . : . : . : . : . :
JMFF036O06+ ATACAGTCTGAACTCGGAGAAGAAAAGCAGGAGCATGGCGATGGAGGAGACGAGGGTGAT
JMFS013D04+ ATACAGTCTGAACTCGGAGAAGAAAAGCAGGAGCATGGCGATGGAGGAGACGAGGGTGAT
JMSF006I02+ AAGCAGGAGCATGGCGATGGAGGAGACGAGGGTGAT
                      ____________________________________________________________
consensus ATACAGTCTGAACTCGGAGAAGAAAAGCAGGAGCATGGCGATGGAGGAGACGAGGGTGAT
 
. : . : . : . : . : . :
JMFF036O06+ AACACCGCCGGAGAGGGTACGGTTGTAGAAATCCTCATTGATTTTCGGGTAAGCATCCAA
JMFS013D04+ AACACCGCCGGAGAGGGTACGGTTGTAGAAATCCTCATTGATTTTCGGGTAAGCATCCAA
JMSF006I02+ AACACCGCCGGAGAGGGTACGGTTGTAGAAATCCTCATTGATTTTCGGGTAAGCATCCAA
                      ____________________________________________________________
consensus AACACCGCCGGAGAGGGTACGGTTGTAGAAATCCTCATTGATTTTCGGGTAAGCATCCAA
 
. : . : . : . : . : . :
JMFF036O06+ GTTCCTGAGCTTATTGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
JMFF020G21+ TGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
JMFS013D04+ GTTCCTGAGCTTATTGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
JMSF006I02+ GTTCCTGAGCTTATTGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
                      ____________________________________________________________
consensus GTTCCTGAGCTTATTGAATACTTTATCCATTCCTGCAACTACCCAGACCTAGACCTCTCT
 
. : . : . : . : . : . :
JMFF036O06+ TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
JMFF020G21+ TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
JMFS013D04+ TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
JMSF006I02+ TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
                      ____________________________________________________________
consensus TCTGTATCACATACGCATAAATATCAGAAATCTCTTCTCTTTACCGCCCCGGACGTGGCT
 
. : . : . : . : . : . :
JMFF036O06+ CGCCGGCTTCTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
JMFF020G21+ CGCCGGCTTNTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
JMFS013D04+ CGCCGGCTTCTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
JMSF006I02+ CGCCGGCTTCTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
                      ____________________________________________________________
consensus CGCCGGCTTCTGCAAAAGGTAGACGACGGCACGGCGAACGACAGCGGAGGAAGCGAGAGT
 
. : . : . : . : . : . :
JMFS013D04+ ACGGAATTTGGTGCGGTGTCGGGTTGGGAATATATGTATGGGATGAAATCGGGTCGGGTT
JMSF006I02+ ACGGAATTTGGTGCGGTGTCGGGTTGGGAATATATGTATGGGATGAAATCGGGTCGGGTT
                      ____________________________________________________________
consensus ACGGAATTTGGTGCGGTGTCGGGTTGGGAATATATGTATGGGATGAAATCGGGTCGGGTT
 
. : . : . : . : . : . :
JMFS013D04+ CGTCAACGTGACCGAGGCAGAATCGGCGTCGAGCCAGTAGCCACCGGT
JMSF006I02+ CGTCAACGTGACCGAGGCAGAATCGGCGTCGAGCCAGTAGCCACCGGTGCGTCAGCGGTC
                      ____________________________________________________________
consensus CGTCAACGTGACCGAGGCAGAATCGGCGTCGAGCCAGTAGCCACCGGTGCGTCAGCGGTC