Contig 013234:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS020E05Sequence611013234 (7)ref|XP_010692517.1|61.2PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris subsp. vulgaris]
JMFS095F05Sequence627013234 (7)ref|XP_010692517.1|129PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris subsp. vulgaris]
JMFS105C10Sequence622013234 (7)gb|KJB48829.1|1e-24hypothetical protein B456_008G089200 [Gossypium raimondii]
JMFS134B02Sequence624013234 (7)gb|KJB48829.1|1e-26hypothetical protein B456_008G089200 [Gossypium raimondii]
JMSF006E16Sequence294013234 (7)210008429 (4)
JMSF009C19Sequence334013234 (7)775008429 (4)ref|NP_001065797.2|1e-64Os11g0157000 [Oryza sativa Japonica Group] dbj|BAF27642.2| Os11g0157000 [Oryza s
JMSF020D07Sequence632013234 (7)gb|KJB48829.1|6e-24hypothetical protein B456_008G089200 [Gossypium raimondii]712008429 (4)ref|NP_001065797.2|1e-26Os11g0157000 [Oryza sativa Japonica Group] dbj|BAF27642.2| Os11g0157000 [Oryza s

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS095F05+ AATTCATCCAAGTGAGA
                      ____________________________________________________________
consensus AATTCATCCAAGTGAGA
 
. : . : . : . : . : . :
JMFS095F05+ TTTAATAGAAGTACCTTCCGTCATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
JMFS134B02+ TAGAAGTACCTTCCGTCATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
JMFS020E05+ GTCATACGGATTGTGTACAGACGCTCCTTCAAACGCAGCAT
JMFS105C10+ TTCCGTCATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
JMSF020D07+ CATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
                      ____________________________________________________________
consensus TTTAATAGAAGTACCTTCCGTCATACGGATTGTGTACAGACGCTCCTTCAGGCGTAGCGT
 
. : . : . : . : . : . :
JMFS095F05+ GTTTGCCAGAGTTTTGGCCATGTAAAGCGTATCCAACTTGGACCATAAATCTGACGCAGT
JMFS134B02+ GTTCGCCAGAGTTTTGGCCATGTAAAGCGTATCCAGCTTGGACCATAAATCTGACGCAGT
JMFS020E05+ GTTCGCCAGAGTTTTGGCCATGTAAAGCGTATCCAGCTTGGACCATAAATCTAACGCAGT
JMFS105C10+ GTTCGCCAGAGTTTTGGCCATGTAAAGCGTATCCAGCTTGGACCATAAATCTGACGCAGT
JMSF020D07+ GTTCGCCAGAGTTTTGGCCANGTAAAGCGTATCCAGCTTGGACCATAAATCTGACGCAGT
                      ____________________________________________________________
consensus GTTCGCCAGAGTTTTGGCCATGTAAAGCGTATCCAGCTTGGACCATAAATCTGACGCAGT
 
. : . : . : . : . : . :
JMFS095F05+ CGTCTCACTTAACACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
JMFS134B02+ CGTCTCACTTAATACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
JMFS020E05+ CGTCTCACTTACCACCTCACGTAGAACCTCTTTAGACATGCACAAAAAGGATGGTTGAAC
JMFS105C10+ CGTCTCACTTAATACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
JMSF020D07+ CGTCTCACTTAATACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
                      ____________________________________________________________
consensus CGTCTCACTTAATACCTCACGTAGAACCTCTTTAGACAGACAC-AAAAGAATGGTTGAAC
 
. : . : . : . : . : . :
JMFS095F05+ GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
JMFS134B02+ GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
JMFS020E05+ GTGCCTTGTCATCCAAATCTTCCCAATCTTCATTTGTCATTGCAGCTGGTTTCTTCTTCT
JMFS105C10+ GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
JMSF020D07+ GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
                      ____________________________________________________________
consensus GTGCCTTGTCATCCAGATCTTCCCAATCTACATCTGTCATTGTAGCCGGTTTCTTCTTCT
 
. : . : . : . : . : . :
JMFS095F05+ TCCCAGCTAGCGCTTTCTTCAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
JMFS134B02+ TCCCAGCTAGCGCTTTCTTCAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
JMFS020E05+ TCCTAGCTAGAGCTTTCTTCAAACTGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCT
JMFS105C10+ TCCCAGCTAGCGCTTTCTTTAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
JMSF020D07+ TCCCAGCTAGCGCTTTCTTTAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
                      ____________________________________________________________
consensus TCCCAGCTAGCGCTTTCTTCAAACCGTTCTGGGTTAGAACGGCTTCCATCTGAACCTTCC
 
. : . : . : . : . : . :
JMFS095F05+ AGATAGAAAAGCTAATTTTCCCGTCGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
JMFS134B02+ AGATAGAAAAGCTAATTTTCCCGTCGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
JMFS020E05+ AGATAGAAAAGCTAATTTTCC---AGAACTTCTCGATGTCGAACTTGGTAACAGTTGACA
JMFS105C10+ AGATAGAAAAGCTAATTTTCCCGTTGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
JMSF009C19+ GAACTTCTCGATATCGAACTTGGTAACAGTTGACA
JMSF020D07+ AGATAGAAAAGCTAATTTTCCCGTTGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
                      ____________________________________________________________
consensus AGATAGAAAAGCTAATTTTCCCGTTGAACTTCTCGATATCGAACTTGGTAACAGTTGACA
 
. : . : . : . : . : . :
JMFS095F05+ TCTTTGAAAATAACTCTCAATTAAACTTGGCTCTGATACCACTTGTTAGGAATATAGCGG
JMFS134B02+ TCTTTGAAAATAACTCTCAATTAAACCTGGCTCTGATACCACTTGTTAGGAATATAGCGG
JMFS020E05+ TCTTTGAAAATAATTCTCAAGTAAACC--GTTTTGATACCACTTGTTAGGAATATAGCGG
JMFS105C10+ TCTTTGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
JMSF009C19+ TCTNTGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
JMSF020D07+ TCTTTGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
JMSF006E16+ TGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
                      ____________________________________________________________
consensus TCTTTGAAAATAACTCTCAATTAAACC--GCTCTGATACCACTTGTTAGGAATATAGCGG
 
. : . : . : . : . : . :
JMFS095F05+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAA
JMFS134B02+ AATAATGCGGAAGCAAAGAATCGAAAATTGAGAATTATAGAAGTATAATAATAGGAAAAA
JMFS020E05+ AATAATGCGGAAGCGACGAATCAAAAATTAAGAATTATAGAAGTTAAATAATAGGGAGAA
JMFS105C10+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
JMSF009C19+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
JMSF020D07+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
JMSF006E16+ AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
                      ____________________________________________________________
consensus AATAATGCGGAAGCGAAGAATCGAAAATTGAGAATTATAGAAGTTAAATAATAGGGAAAA
 
. : . : . : . : . : . :
JMFS134B02+ TATATAAACGAAGAAAATTATATAAATGACAAAA
JMFS020E05+ TATA
JMFS105C10+ TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
JMSF009C19+ TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
JMSF020D07+ TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
JMSF006E16+ TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
                      ____________________________________________________________
consensus TATATAAATGAAGAAAATTATATAAAAGACAAAAGAATTAGGAATAAAGGAAATATATAT
 
. : . : . : . : . : . :
JMFS105C10+ TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
JMSF009C19+ TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
JMSF020D07+ TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
JMSF006E16+ TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
                      ____________________________________________________________
consensus TATAACTTAAAAGAGTTGAAAGAATATAATATATATATATATATATCTCTACGTGGGAAA
 
. : . : . : . : . : . :
JMFS105C10+ TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATT
JMSF009C19+ TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATTGATGTGAGAATGAGC
JMSF020D07+ TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATTGATGTGAGAATGAGC
JMSF006E16+ TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATTGATGTGAGAATGAGCGACCC
                      ____________________________________________________________
consensus TGAAAGAAAGCAAATGAATGAATTCAAAATATATTGAATTGATGTGAGAATGAGCGACCC