Contig 013232:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002N19Sequence523013232 (3)ref|XP_004251875.1|8e-37PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Solanum lycopersic761012215 (3)ref|XP_009595820.1|2e-89PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Nicotiana tomentos
JMFF034H04Sequence550013232 (3)ref|XP_004251875.1|2e-42PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Solanum lycopersic797012215 (3)emb|CDP05967.1|3e-98unnamed protein product [Coffea canephora]
JMSF006C09Sequence282013232 (3)

Alignment

This contig is upended


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JMFF002N19+                                                     TTGCCCAACACNTACAGA
                      ____________________________________________________________
consensus                                                       TTGCCCAACACNTACAGA
 
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JMFF002N19+           TCTGACAGAACTTCCAACAGCCGCAACTTCACCACTGATATCACGTCCCAGAATCAATGG
JMFF034H04+                    ACTTCCAACAGCCGCAACTTCACCACTGATATCACGTCCCAGAATCAATGG
                      ____________________________________________________________
consensus             TCTGACAGAACTTCCAACAGCCGCAACTTCACCACTGATATCACGTCCCAGAATCAATGG
 
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JMFF002N19+           CAGAAGTGGTTCAAATATTGAACGGCCATACCCTGATCGCATTCTGGTGTCAAGGGGGTT
JMFF034H04+           CAGAAGTGGTTCAAATATTGAACGGCCATACCCTGATCGCATTCTGGTGTCAAGGGGGTT
                      ____________________________________________________________
consensus             CAGAAGTGGTTCAAATATTGAACGGCCATACCCTGATCGCATTCTGGTGTCAAGGGGGTT
 
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JMFF002N19+           GATAGAGACAGCGCGAGTGCGAACGAGCACTTGATTGGGTTTGAGATCAGGAACGCTGAC
JMFF034H04+           GATAGAGACAGCGCGAGTGCGAACGAGCACTTGATTGGGTTTGAGATCAGGAACGCTGAC
                      ____________________________________________________________
consensus             GATAGAGACAGCGCGAGTGCGAACGAGCACTTGATTGGGTTTGAGATCAGGAACGCTGAC
 
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JMFF002N19+           ATTGTCACGAAGCTGAAGCACGTCGGGGTCGCCGAATCGCGGCAGAAGCACCGCCCTGCA
JMFF034H04+           ATTGTCACGAAGCTGAAGCACGTCGGGGTCGCCGAATCGCGGCAGAAGCACCGCCCTGCA
                      ____________________________________________________________
consensus             ATTGTCACGAAGCTGAAGCACGTCGGGGTCGCCGAATCGCGGCAGAAGCACCGCCCTGCA
 
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JMFF002N19+           GCTCGTCGCCATACCTCTCCTAAACCCTAACATCATCCGCAATCCACCGTTGTCATTTCC
JMFF034H04+           GCTCGTCGCCATACCTCTCCTAAACCCTAACATCATCCGCAATCCACCGTTGTCATTTCC
                      ____________________________________________________________
consensus             GCTCGTCGCCATACCTCTCCTAAACCCTAACATCATCCGCAATCCACCGTTGTCATTTCC
 
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JMFF002N19+           AATTACCACCGCGCTTCTCCGTAGTAAAAGCCGCATCGTTCCGTAGAATTGTTGAGGAAA
JMFF034H04+           AATTACCACCGCGCTTCTCCGTAGTAAAAGCCGCATCGTTCCGTAGAATTGTTGAGGAAA
JMSF006C09+                             CCGTAGTAAAAGCCGCATCGTTCCGTAGAATTGTTGAGGAAA
                      ____________________________________________________________
consensus             AATTACCACCGCGCTTCTCCGTAGTAAAAGCCGCATCGTTCCGTAGAATTGTTGAGGAAA
 
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JMFF002N19+           TTAAGTGAAAGCCGGAGGAGCGTCCAATATCACAATCTTTCTCAATTCTCTATTACGAAC
JMFF034H04+           TTAAGTGAAAGCCGGAGGAGCGTCCAATATCACAATCTTTCTCAATTCTCTATTACGAAC
JMSF006C09+           TTAAGTGAAAGCCGGAGGAGCGTCCAATATCACAATCTTTCTCAATTCTCTATTACGAAC
                      ____________________________________________________________
consensus             TTAAGTGAAAGCCGGAGGAGCGTCCAATATCACAATCTTTCTCAATTCTCTATTACGAAC
 
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JMFF002N19+           ATATATGCCAAGAGTTGATGTCGTCAAAATTGAACAAAGAATCCAGTGACTTCTATTCAT
JMFF034H04+           ATATATGCCAAGAGTTGATGTCGTCAAAATTGAACAAAGAATCCAGTGACTTCTATTCAT
JMSF006C09+           ATATATGCCAAGAGTTGATGTCGTCAAAATTGAACAAAGAATCCAGTGACTTCTATTCAT
                      ____________________________________________________________
consensus             ATATATGCCAAGAGTTGATGTCGTCAAAATTGAACAAAGAATCCAGTGACTTCTATTCAT
 
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JMFF002N19+           TCATTCATTCAAGATGTGCAAATAC                                   
JMFF034H04+           TCATTCATTCAAGATGTGCATATACATATGCTTTCCCGCATGTGAGTGTGGTGAAGGCGA
JMSF006C09+           TCATTCATTCAAGATGTGCATATACATATGCTTTCCCGCATGTGAGTGTGGTGAAGGCGA
                      ____________________________________________________________
consensus             TCATTCATTCAAGATGTGCATATACATATGCTTTCCCGCATGTGAGTGTGGTGAAGGCGA
 
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JMFF034H04+           GGGGAGAAGACGTGTCTGC                                         
JMSF006C09+           GGGGAGAAGACGTGTCTGCAAAATTATCCGCAGGACAGATTTGGGCATTTTGGTAATCGC
                      ____________________________________________________________
consensus             GGGGAGAAGACGTGTCTGCAAAATTATCCGCAGGACAGATTTGGGCATTTTGGTAATCGC