clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF004K24 | Sequence | 267 | 013223 (3) | ref|XP_009768551.1| | 2e-05 | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana | 370 | 002759 (2) | |||
JMSF038A18 | Sequence | 657 | 013223 (3) | ref|XP_009768551.1| | 2e-95 | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana | |||||
JMSF045F05 | Sequence | 812 | 013223 (3) | ref|XP_009768551.1| | 3e-122 | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana | 755 | 002759 (2) | ref|XP_010271641.1| | 8e-102 | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Nelu |
This contig is upended
. : . : . : . : . : . :
JMSF045F05+ CTGTATAAACAGGTACATCAACCTGTTCACCCAAAATAACAA
____________________________________________________________
consensus CTGTATAAACAGGTACATCAACCTGTTCACCCAAAATAACAA
. : . : . : . : . : . :
JMSF045F05+ GTTGGTCTATTGCAGCAGGTCTATACACATCTCCAGCAATTAGCATGCATTTTTTCCCCA
____________________________________________________________
consensus GTTGGTCTATTGCAGCAGGTCTATACACATCTCCAGCAATTAGCATGCATTTTTTCCCCA
. : . : . : . : . : . :
JMSF038A18+ ACCTTGTAGAC
JMSF045F05+ GCTTTTTAAGATATAAAGCTAATTTTGCACTGATAGTGGTCTTTCCAACACCTTGTAGAC
____________________________________________________________
consensus GCTTTTTAAGATATAAAGCTAATTTTGCACTGATAGTGGTCTTTCCAACACCTTGTAGAC
. : . : . : . : . : . :
JMSF038A18+ CGGCTAATAGAATAACTGTGGGGCCAGATTTTGCAAAAATTAGCTCAGAAACCTCTCCAC
JMSF045F05+ CGGCTAATAGAATAACTGTGGGGCCAGATTTTGCAAAAATTAGCTCAGAAACCTCTCCAC
____________________________________________________________
consensus CGGCTAATAGAATAACTGTGGGGCCAGATTTTGCAAAAATTAGCTCAGAAACCTCTCCAC
. : . : . : . : . : . :
JMSF038A18+ CCATCAGTTTCACAAGTTCGTCATGCACAATTTTAACCATTTGCTGATCTGGTCTCACTC
JMSF045F05+ CCATCAGTTTCACAAGTTCGTCATGCACAATTTTAACCATTTGCTGATCTGGTCTCACTC
____________________________________________________________
consensus CCATCAGTTTCACAAGTTCGTCATGCACAATTTTAACCATTTGCTGATCTGGTCTCACTC
. : . : . : . : . : . :
JMSF038A18+ CTCGAATCAAGCCAGTGCCAACAGCTTGATCACTAATAGATTGAACAAATCTTCTCACAA
JMSF045F05+ CTCGAATCAAGCCAGTGCCAACAGCTTGATCACTAATAGATTGAACAAATCTTCTCACAA
____________________________________________________________
consensus CTCGAATCAAGCCAGTGCCAACAGCTTGATCACTAATAGATTGAACAAATCTTCTCACAA
. : . : . : . : . : . :
JMSF038A18+ CCGGAAGACTAACATCTGCCTCTAGTAGAGCCCTCCTAATGTCTCTCATAGGTTCAACAA
JMSF045F05+ CCGGAAGACTAACATCTGCCTCTAGTAGAGCCCTCCTAATGTCTCTCATAGGTTCAACAA
____________________________________________________________
consensus CCGGAAGACTAACATCTGCCTCTAGTAGAGCCCTCCTAATGTCTCTCATAGGTTCAACAA
. : . : . : . : . : . :
JMSF038A18+ TGTTTTCCTTGTTCAAGACCTCTTCCCCTCTAAGCTTGGTCCAGGCGGATTCAAGTCCGG
JMSF045F05+ TGTTTTCCTTGTTCAAGACCTCTTCCCCTCTAAGCTTGGTCCAGGCGGATTCAAGTCCGG
____________________________________________________________
consensus TGTTTTCCTTGTTCAAGACCTCTTCCCCTCTAAGCTTGGTCCAGGCGGATTCAAGTCCGG
. : . : . : . : . : . :
JMSF038A18+ TGGTGAGCTGCCCGAACATTTCAGCTCTGATCACACCGCGCATTTCCCTTCTGAAACTCA
JMSF045F05+ TGGTGAGCTGCCCGAACATTTCAGCTCTGATCACACCGCGCATTTCCCTTCTGAAACTCA
____________________________________________________________
consensus TGGTGAGCTGCCCGAACATTTCAGCTCTGATCACACCGCGCATTTCCCTTCTGAAACTCA
. : . : . : . : . : . :
JMSF038A18+ CTACATTCTTGGAATTTATAAACCTCCACGCCTCTCTGGTGAATGAGTTTCGAGAAGAGA
JMSF045F05+ CTACATTCTTGGAATTTATAAACCTCCACGCCTCTCTGGTGAATGAGTTTCGAGAAGAGA
JMSF004K24+ CTCTGGTGAATGAGTTTCGAGAAGAGA
____________________________________________________________
consensus CTACATTCTTGGAATTTATAAACCTCCACGCCTCTCTGGTGAATGAGTTTCGAGAAGAGA
. : . : . : . : . : . :
JMSF038A18+ AAGAGAGGGAGTGGGTGGAAGCAGGCCAAGAAGAAGGAAGAGAAAGATAGGAGGTTTTGG
JMSF045F05+ AAGAGAGGGAGTGGGTGGAAGCAGGCCAAGAAGAAGGAAGAGAAAGATAGGAGGTTTTGG
JMSF004K24+ AAGAGAGGGAGTGGGTGGAAGCAGGCCAAGAAGAAGGAAGAGAAAGATAGGAGGTTTTGG
____________________________________________________________
consensus AAGAGAGGGAGTGGGTGGAAGCAGGCCAAGAAGAAGGAAGAGAAAGATAGGAGGTTTTGG
. : . : . : . : . : . :
JMSF038A18+ GATTTGAGAGGGAGATTTTGGTGAGCGAAGGTGAGAAATGGCGGGAAGCAACGGTGGACG
JMSF045F05+ GATTTGAGAGGGAGATTTTGGTGAGCGAAGGTGAGAAATGGCGGGAAGCAACGGTGGACG
JMSF004K24+ GATTTGAGAGGGAGATTTTGGTGAGCGAAGGTGAGAAATGGCGGGAAGCAACGGTGGACG
____________________________________________________________
consensus GATTTGAGAGGGAGATTTTGGTGAGCGAAGGTGAGAAATGGCGGGAAGCAACGGTGGACG
. : . : . : . : . : . :
JMSF038A18+ AGAAAGTTTCCATGGGGATTTTATTTATTTTCCGATGGCCGGAAATGGAAGAGTTTCCGG
JMSF045F05+ AGAAAGTTTCCATGGGGATTTTATTTATTTTCCGATGGCCGGAAATGGAAGAGTTTCCGG
JMSF004K24+ AGAAAGTTTCCATGGGGATTTTATTTATTTTCCGATGGCCGGAAATGGAAGAGTTTCCGG
____________________________________________________________
consensus AGAAAGTTTCCATGGGGATTTTATTTATTTTCCGATGGCCGGAAATGGAAGAGTTTCCGG
. : . : . : . : . : . :
JMSF038A18+ CTGTTTCTCAGTCTAACATGAAACTCTCCGA
JMSF045F05+ CTGTTTCTCAGTCTAACATGAAACTCTCCGA
JMSF004K24+ CTGTTTCTCAGTCTAACATGAAACTCTCCGAACAGTGTTGAGTCATCGGAGATTCTGGTC
____________________________________________________________
consensus CTGTTTCTCAGTCTAACATGAAACTCTCCGAACAGTGTTGAGTCATCGGAGATTCTGGTC