Contig 013213:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003I13Sequence416013213 (2)ref|XP_009778629.1|108PREDICTED: uncharacterized protein LOC104227947 [Nicotiana sylvestris]
JMSF034G02Sequence709013213 (2)ref|XP_011095278.1|3e-70PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27778015093ref|XP_010315042.1|1e-59PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27

Alignment

This contig is upended


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JMSF034G02+                                                                 CACCAT
                      ____________________________________________________________
consensus                                                                   CACCAT
 
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JMSF034G02+           TCCATGGCCCTGAACGAAGCACTTCTTNGGCGCCAGTTTTTATGACCACTTGTGGATATC
                      ____________________________________________________________
consensus             TCCATGGCCCTGAACGAAGCACTTCTTNGGCGCCAGTTTTTATGACCACTTGTGGATATC
 
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JMSF034G02+           CTGTGGGTTCGAGGAAAAATTTATGATCCCCGACGCCTGGATTGTTTTCTGTCTTCCATG
                      ____________________________________________________________
consensus             CTGTGGGTTCGAGGAAAAATTTATGATCCCCGACGCCTGGATTGTTTTCTGTCTTCCATG
 
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JMSF034G02+           ATGACATACCAATCTCAACACCAGTGATGAAATTCTTCCCAAACATCATGTCTGGCATAA
                      ____________________________________________________________
consensus             ATGACATACCAATCTCAACACCAGTGATGAAATTCTTCCCAAACATCATGTCTGGCATAA
 
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JMSF034G02+           GAGTATCTGTAGGATGATGAAAACTTTGCCACAGGAAAGTATCGTTTGCATCGGTAATGA
                      ____________________________________________________________
consensus             GAGTATCTGTAGGATGATGAAAACTTTGCCACAGGAAAGTATCGTTTGCATCGGTAATGA
 
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JMSF034G02+           CCAGATTCCCAGAATCTAATAATTTGGCAACTGGATTTTGGACTAATATGGAAGTGTTAG
                      ____________________________________________________________
consensus             CCAGATTCCCAGAATCTAATAATTTGGCAACTGGATTTTGGACTAATATGGAAGTGTTAG
 
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JMSF034G02+           TGTGCCATAAAATGGAATTGTTACCTTCAACAAGAGCTAGCCTTCCTGAATGGATGATCT
                      ____________________________________________________________
consensus             TGTGCCATAAAATGGAATTGTTACCTTCAACAAGAGCTAGCCTTCCTGAATGGATGATCT
 
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JMSF034G02+           GGAAGACAACTGAAGAAGAGGTATTGGTGATGGGTGTATCTCTGTTGGCAACCCAAACCA
JMSF003I13+                                              GTATCTCTATTGGCAACCCAAACTA
                      ____________________________________________________________
consensus             GGAAGACAACTGAAGAAGAGGTATTGGTGATGGGTGTATCTCTGTTGGCAACCCAAACTA
 
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JMSF034G02+           CTGTGAAAACTGGTATTTGCTTGTACCATATTCCAACATAGCGATTCAATGAATTGGTTG
JMSF003I13+           TAGTGGAAACGGGTATTTGCTTGTACCATATGCCAACATAGCAATTCTGTGAATTGGTTG
                      ____________________________________________________________
consensus             TTGTGGAAACTGGTATTTGCTTGTACCATATTCCAACATAGCGATTCTGTGAATTGGTTG
 
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JMSF034G02+           GGCTAAAGAATCCCAACTCAAAGATTCCACCAGAAGAAACAATGGTTTCACCATCTTTAA
JMSF003I13+           GGCTAAAAAATCCCATCTCAAAGATTCCGCCAGAAGAAACAATGGTGTCGCCATCCTTAA
                      ____________________________________________________________
consensus             GGCTAAAGAATCCCATCTCAAAGATTCCGCCAGAAGAAACAATGGTTTCGCCATCTTTAA
 
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JMSF034G02+           GGA                                                         
JMSF003I13+           GGAATTGAGTGAGGCTAATGGTATCACGAGCAAAGGAAACCTCCTGAACTTGTCCAAACA
                      ____________________________________________________________
consensus             GGAATTGAGTGAGGCTAATGGTATCACGAGCAAAGGAAACCTCCTGAACTTGTCCAAACA
 
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JMSF003I13+           CTTATCGCAAGGAATTGGCTCGCTATAGGCTCTTTCTTTGCTCATTTTCCGATCAAAGTC
                      ____________________________________________________________
consensus             CTTATCGCAAGGAATTGGCTCGCTATAGGCTCTTTCTTTGCTCATTTTCCGATCAAAGTC
 
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JMSF003I13+           GGATCTTCTTAATCGCGAAGGATCCCCGGCCCTCCATTGCATAGGCACCCAAACTCCCCT
                      ____________________________________________________________
consensus             GGATCTTCTTAATCGCGAAGGATCCCCGGCCCTCCATTGCATAGGCACCCAAACTCCCCT
 
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JMSF003I13+           TTTCTCAAGTTCCGTGTTGCGTCCAAGAATGAGCTGCGCCTGCAAATTTTACCATGGGCC
                      ____________________________________________________________
consensus             TTTCTCAAGTTCCGTGTTGCGTCCAAGAATGAGCTGCGCCTGCAAATTTTACCATGGGCC