| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS050E12 | Sequence | 476 | 013209 (9) | emb|CDP17621.1| | 1e-30 | unnamed protein product [Coffea canephora] | |||||
| JMFS089E07 | Sequence | 607 | 013209 (9) | ref|XP_006353070.1| | 6e-40 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Solanum tuberosum] | |||||
| JMFS094H12 | Sequence | 627 | 013209 (9) | ref|XP_006353070.1| | 1e-47 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Solanum tuberosum] | |||||
| JMFS134H01 | Sequence | 521 | 013209 (9) | ref|XP_006353070.1| | 1e-33 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Solanum tuberosum] | |||||
| JMFS148A09 | Sequence | 620 | 013209 (9) | ref|XP_006353070.1| | 2e-55 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Solanum tuberosum] | |||||
| JMSF003D14 | Sequence | 312 | 013209 (9) | ref|XP_010272313.1| | 3e-12 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nelumbo nucifera] | 766 | 010110 (6) | ref|XP_009628932.1| | 6e-65 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nicotiana tomentosiformis] |
| JMSF008O22 | Sequence | 258 | 013209 (9) | ref|XP_010272313.1| | 4e-11 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nelumbo nucifera] | 748 | 010110 (6) | ref|XP_009782517.1| | 5e-36 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nicotiana sylvestris] |
| JMSF046P04 | Sequence | 747 | 013209 (9) | ref|XP_006353070.1| | 2e-71 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Solanum tuberosum] | 634 | 010110 (6) | ref|XP_009782517.1| | 6e-48 | PREDICTED: putative E3 ubiquitin-protein ligase LIN [Nicotiana sylvestris] |
| JMSF053K05 | Sequence | 621 | 013209 (9) | ref|XP_006353070.1| | 2e-47 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Solanum tuberosum] | |||||
This contig is upended
. : . : . : . : . : . :
JMSF046P04+ GA
____________________________________________________________
consensus GA
. : . : . : . : . : . :
JMFS148A09+ ATGATTGATAAGTANAGCTGT
JMSF046P04+ TGCCTGGCTGAAATTCTGTCGTTTTTCTGGAGCTTGTAGATGATTGATAAGTAAAGCTGT
____________________________________________________________
consensus TGCCTGGCTGAAATTCTGTCGTTTTTCTGGAGCTTGTAGATGATTGATAAGTAAAGCTGT
. : . : . : . : . : . :
JMSF053K05+ TCA
JMFS094H12+ TCA
JMFS148A09+ GCACAAGCAGAGAGATGGGAATTGGGGATTCCACAAGTTGAACCATTTCTTGAAGTTTCA
JMSF046P04+ GCACAAGCAGAGAGATGGGAATTGGGGATTCCACAAGTTGAACCATTTCTTGAAGTTTCA
____________________________________________________________
consensus GCACAAGCAGAGAGATGGGAATTGGGGATTCCACAAGTTGAACCATTTCTTGAAGTTTCA
. : . : . : . : . : . :
JMSF053K05+ GAGTTCAAAGAAGCTACAATGGTTAAGAGACTGATGGAGTTCTGCAGGGATTTGACTTCC
JMFS094H12+ GAGTTCAAAGAAGCTACAATGGTTAAGAGACTGATGGAGTTCTGCAGGGATTTGACTTCC
JMFS148A09+ GAGTTCAAAGAAGCTACAATGGTTAAGAGACTGATGGAGTTCTGCAGGGATTTGACTTCC
JMSF046P04+ GAGTTCAAAGAAGCTACAATGGTTAAGAGACTGATGGAGTTCTGCAGGGATTTGACTTCC
JMFS089E07+ TGCAGGGATTTGACTTCC
____________________________________________________________
consensus GAGTTCAAAGAAGCTACAATGGTTAAGAGACTGATGGAGTTCTGCAGGGATTTGACTTCC
. : . : . : . : . : . :
JMSF053K05+ AGTTCTTTCTTGGTGCCATTAGGCCTGGCTGCCAGGCTCTCAACACTCTCAATTGCCATC
JMFS134H01+ GGCTCTCAACACTCTCAAGTGCCATC
JMFS094H12+ AGTTCTTTCTTGGTGCCATTAGGCCTGGCTGCCAGGCTCTCAACACTCTCAATTGCCATC
JMFS148A09+ AGTTCTTTCTTGGTGCCATTAGGCCTGGCTGCCAGGCTCTCAACACTCTCAATTGCCATC
JMSF046P04+ AGTTCTTTCTTGGTGCCATTAGGCCTGGCTGCCAGGCTCTCAACACTCTCAATTGCCATC
JMFS089E07+ AGTTCTTTCTTGGTGCCATTAGGCCTGGCTGCCAGGCTCTCAACACTCTCAATTGCCATC
____________________________________________________________
consensus AGTTCTTTCTTGGTGCCATTAGGCCTGGCTGCCAGGCTCTCAACACTCTCAATTGCCATC
. : . : . : . : . : . :
JMSF053K05+ TCTATATTTGCGAAAACGGGGTTGTCATCAGATTCAGCCTTGTTCCTGGTGAAACATGCA
JMFS134H01+ TCTATATTTGCGAAAACGGGGTTGTCATCAGATTCAGCCTTGTTCCTGGTGAAACATGCA
JMFS050E12+ TTGCGAAAACGGGGTTGTCATCAGATTCAGCCTTGTTCCTGGTGAAACATGCA
JMFS094H12+ TCTATATTTGCGAAAACGGGGTTGTCATCAGATTCAGCCTTGTTCCTGGTGAAACATGCA
JMFS148A09+ TCTATATTTGCGAAAACGGGGTTGTCATCAGATTCAGCCTTGTTCCTGGTGAAACATGCA
JMSF046P04+ TCTATATTTGCGAAAACGGGGTTGTCATCAGATTCAGCCTTGTTCCTGGTGAAACATGCA
JMFS089E07+ TCTATATTTGCGAAAACGGGGTTGTCATCAGATTCAGCCTTGTTCCTGGTGAAACATGCA
____________________________________________________________
consensus TCTATATTTGCGAAAACGGGGTTGTCATCAGATTCAGCCTTGTTCCTGGTGAAACATGCA
. : . : . : . : . : . :
JMSF053K05+ TAGCACTTGCCCTTGATCGCCTCGCGAAAGCTTTGATCTCTCAGGTACCTTCCAACATAG
JMFS134H01+ TAGCACTTGCCCTTGATCGCCTCGCGAAAGCTTTGATCTCTCAGGTACCTTCCAACATAG
JMFS050E12+ TAGCACTTGCCCTTGATCGCCTCGCGAAAGCTTTGATCTCTCAGGTACCTTCCAACATAG
JMFS094H12+ TAGCACTTGCCCTTGATCGCCTCGCGAAAGCTTTGATCTCTCAGGTACCTTCCAACATAG
JMFS148A09+ TAGCACTTGCCCTTGATCGCCTCGCGAAAGCTTTGATCTCTCAGGTACCTTCCAACATAG
JMSF046P04+ TAGCACTTGCCCTTGATCGCCTCGCGAAAGCTTTGATCTCTCAGGTACCTTCCAACATAG
JMFS089E07+ TAGCACTTGCCCTTGATCGCCTCGCGAAAGCTTTGATCTCTCAGGTACCTTCCAACATAG
____________________________________________________________
consensus TAGCACTTGCCCTTGATCGCCTCGCGAAAGCTTTGATCTCTCAGGTACCTTCCAACATAG
. : . : . : . : . : . :
JMSF053K05+ CCAGACAGTATAGAAACCATTGCTCTAATGGCAACTTCATCAATTGCAGGCTCATTATCT
JMFS134H01+ CCAGACAGTATAGAAACCATTGCTCTAATGGCAACTTCATCAATTGCAGGCTCATTATCT
JMFS050E12+ CCAGACAGTATAGAAACCATTGCTCTAATGGCAACTTCATCAATTGCAGGCTCATTATCT
JMFS094H12+ CCAGACAGTATAGAAACCATTGCTCTAATGGCAACTTCATCAATTGCAGGCTCATTATCT
JMFS148A09+ CCAGACAGTATAGAAACCATTGCTCTAATGGCAACTTCATCAATTGCAGGCTCATTATCT
JMSF046P04+ CCAGACAGTATAGAAACCATTGCTCTAATGGCAACTTCATCAATTGCAGGCTCATTATCT
JMFS089E07+ CCAGACAGTATAGAAACCATTGCTCTAATGGCAACTTCATCAATTGCAGGCTCATTATCT
____________________________________________________________
consensus CCAGACAGTATAGAAACCATTGCTCTAATGGCAACTTCATCAATTGCAGGCTCATTATCT
. : . : . : . : . : . :
JMSF053K05+ CTGCCTGCAACTGTCTCAGCTGTCGTCGACCATGGATTTGATATCCCCGACTCCAAACTC
JMFS134H01+ CTGCCTGCAACTGTCTCAGCTGTCGTCGACCATGGATTTGATATCCCCGACTCCAAACTC
JMFS050E12+ CTGCCTGCAACTGTTTCAGCTGTCGTCGACCATGGATTTGATATCCCCGACTCCAAACTC
JMSF008O22+ TCGTCGACCATGGATTTGATATCCCCGACTCCAAACTC
JMFS094H12+ CTGCCTGCAACTGTCTCAGCTGTCGTCGACCATGGATTTGATATCCCCGACTCCAAACTC
JMFS148A09+ CTGCCTGCAACTGTCTCAGCTGTCGTCGACCATGGATTTGATATCCCCGACTCCAAACTC
JMSF046P04+ CTGCCTGCAACTGTCTCAGCTGTCGTCGACCATGGATTTGATATCCCCGACTCCAAACTC
JMFS089E07+ CTGCCTGCAACTGTCTCAGCTGTCGTCGACCATGGATTTGATATCCCCGACTCCAAACTC
____________________________________________________________
consensus CTGCCTGCAACTGTCTCAGCTGTCGTCGACCATGGATTTGATATCCCCGACTCCAAACTC
. : . : . : . : . : . :
JMSF053K05+ CTCCTCCTCCTCCTCGACGAGGAGGAATAAAACGAAGAACCTTTGCTCCTCTGCTTGGAA
JMFS134H01+ CTCCTCCTCCTCCTCGACGAGGAGGAATAAAACGAAGAACCTTTGCTCCTCTGCTTGGAA
JMFS050E12+ CTCCTCCTCCTCCTCGACGAGGAGGAATAAAACGAAGAACCTTTGCTCCTCTGCTTGGAA
JMSF008O22+ CTCCTCCTCCTCCTCGACGAGGAGGAATAAAACGAAGAACCTTTGCTCCTCTGCTTGGAA
JMFS094H12+ CTCCTCCTCCTCCTCGACGAGGAGGAATAAAACGAAGAACCTTTGCTCCTCTGCTTGGAA
JMFS148A09+ CTCCTCCTCCTCCTCGACGAGGAGGAATAAAACGAAGAACCTTTGCTCCTCTGCTTGGAA
JMSF046P04+ CTCCTCCTCCTCCTCGACGAGGAGGAATAAAACGAAGAACCTTTGCTCCTCTGCTTGGAA
JMFS089E07+ CTCCTCCTCCTCCTCGACGAGGAGGAATAAAACGAAGAACCTTTGCTCCTCTGCTTGGAA
JMSF003D14+ CCTCTGCTTGGAA
____________________________________________________________
consensus CTCCTCCTCCTCCTCGACGAGGAGGAATAAAACGAAGAACCTTTGCTCCTCTGCTTGGAA
. : . : . : . : . : . :
JMSF053K05+ AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
JMFS134H01+ AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
JMFS050E12+ AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
JMSF008O22+ AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
JMFS094H12+ AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
JMFS148A09+ AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
JMSF046P04+ AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
JMFS089E07+ AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
JMSF003D14+ AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
____________________________________________________________
consensus AAATCCGAGCTTTTTCTGTCATGGCAGATGTAGATAGGCAAAACAACAGACTCGTCTCGA
. : . : . : . : . : . :
JMSF053K05+ GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTCGAGAGCCCTTCCTCCCTCGAAC
JMFS134H01+ GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTCGAGAGCCCTTCCTCCCTCGAAC
JMFS050E12+ GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTNGAGAGCCCTTCCTCCCNCGAAC
JMSF008O22+ GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTCGAGAGCCCTTCCTCCCTCGAAC
JMFS094H12+ GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTCGAGAGCCCTTCCTCCCTCGAAC
JMFS148A09+ GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTCGAGAGCCCTTCCTCCCTCGAA
JMSF046P04+ GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTCGAGAGCCCTTCCTCCCTCGAAC
JMFS089E07+ GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTCGAGAGCCCTTCCTCCCTCGAAC
JMSF003D14+ GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTCGAGAGCCCTTCCTCCCTCGAAC
____________________________________________________________
consensus GATTCTCTTGCTCTGAACTTGACTTTGCTTCGAGCTTCGAGAGCCCTTCCTCCCTCGAAC
. : . : . : . : . : . :
JMSF053K05+ CCTTCTTCCGCTAGGAGTTGTTGCAGAGACG-CCATTGATGGGAGAGAGGGGAGATGTGG
JMFS134H01+ CCTTCTTCCGCTAGGAGTTGTTGCAGAGACGTCCATTGATGGGAGAGAGGGGAGATGTGG
JMFS050E12+ CCTTCTTCCGNTAGGAGGTGGNGCAGAGACG-CCATTGATGGGAGAGAGGGGAGATGTGG
JMSF008O22+ CCTTCTTCCGCTAGGAGTTGTTGCAGAGACG-CCATTGAT
JMFS094H12+ CCTTCTTCCGCTAGGAGTTGTTGCAGAGACG-CCATTGATGGGAGAGAGGGGAGATGTGG
JMSF046P04+ CCTTCTTCCGCTAGGAGTTGTTGCAGAGACG-CCATTGATGGGAGAGAGGGGAGATGTGG
JMFS089E07+ CCTTCTTCCGCTAGGAGTTGTTGCAGAGACG-CCATTGATGGGAGAGAGGGGAGATGTGG
JMSF003D14+ CCTTCTTCCGCTAGGAGTTGTTGCAGAGACG-CCATTGATGGGAGAGAGGGGAGATGTGG
____________________________________________________________
consensus CCTTCTTCCGCTAGGAGTTGTTGCAGAGACG-CCATTGATGGGAGAGAGGGGAGATGTGG
. : . : . : . : . : . :
JMSF053K05+ AATGGCTTCTTTACTGA
JMFS134H01+ AATGGCTTCTT
JMFS094H12+ AATGGCTTCTTTACTGACATTC
JMSF046P04+ AATGGCTTCTTTACTGACATTC
JMFS089E07+ AATGGCTTCTTTACTGACATTCTCTGAGTGCACAAGTGGGGAAGATGAAA
JMSF003D14+ AATGGCTTCTTTACTGACATTCTCTGAGTGCACAAGTGGGGAAGATGAAAGACAAAGCTA
____________________________________________________________
consensus AATGGCTTCTTTACTGACATTCTCTGAGTGCACAAGTGGGGAAGATGAAAGACAAAGCTA
. : . : . : . : . : . :
JMSF003D14+ AGAAAGCCACAGAAATGAGGACAAGAATTAGTGACTGGTTTCCCAATAACTATCTTGATC
____________________________________________________________
consensus AGAAAGCCACAGAAATGAGGACAAGAATTAGTGACTGGTTTCCCAATAACTATCTTGATC