| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002B05 | Sequence | 276 | 013203 (4) | 775 | 010048 (4) | ref|XP_006431220.1| | 5e-34 | hypothetical protein CICLE_v100116002mg, partial [Citrus clementina] gb|ESR44460 | |||
| JMSF039H05 | Sequence | 707 | 013203 (4) | ref|XP_009625279.1| | 3e-110 | PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10-like isofo | 908 | 010048 (4) | gb|AFN89137.1| | 3e-17 | sucrose non-fermenting 1 [Mesembryanthemum crystallinum] |
| JMSF040K17 | Sequence | 660 | 013203 (4) | ref|XP_009625279.1| | 4e-94 | PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10-like isofo | 710 | 010048 (4) | |||
| JMSF048H12 | Sequence | 644 | 013203 (4) | ref|XP_009625279.1| | 5e-94 | PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10-like isofo | 721 | 010048 (4) | gb|ADN44282.1| | 2e-66 | sucrose non-fermenting-1-related protein kinase 1 [Capsicum annuum] |
This contig is upended
. : . : . : . : . : . :
JMSF039H05+ TCAAGAAATGACCATCACGCATGATGT
____________________________________________________________
consensus TCAAGAAATGACCATCACGCATGATGT
. : . : . : . : . : . :
JMSF039H05+ TACTCAAACCAAAATCAGCAATCTTCACATTACATTTGGAATCCAAAAGCAGGTTCTCAG
JMSF048H12+ CCAAAAGCAGGTTCTCAG
JMSF040K17+ CCAAAAGCAGGTTCTCAG
____________________________________________________________
consensus TACTCAAACCAAAATCAGCAATCTTCACATTACATTTGGAATCCAAAAGCAGGTTCTCAG
. : . : . : . : . : . :
JMSF039H05+ GCTTAAGGTCTCTATGGACCACCATATTCCTGTGGCAGTACTCCACTCCAGAAATGATCT
JMSF048H12+ GCTTAAGGTCTCTATGGACCACCATATTCCTGTGGCAGTACTCCACTCCAGAAATGATCT
JMSF040K17+ GCTTAAGGTCTCTATGGACCACCATATTCCTGTGGCAGTACTCCACTCCAGAAATGATCT
____________________________________________________________
consensus GCTTAAGGTCTCTATGGACCACCATATTCCTGTGGCAGTACTCCACTCCAGAAATGATCT
. : . : . : . : . : . :
JMSF039H05+ GTTGAAAGAATTTGCGAGCTTCATCCTCNTGCAAACGGCCCTTCTCTACAATGTAATCAA
JMSF048H12+ GTTGAAAGAATTTGCGAGCTTCATCCTCCTGCAAACGGCCCTTCTCTACAATGTAATCAA
JMSF040K17+ GTTGAAAGAATTTGCGAGCTTCATCCTCCTGCAAACGGCCCTTCTCTACAATGTAATCAA
____________________________________________________________
consensus GTTGAAAGAATTTGCGAGCTTCATCCTCCTGCAAACGGCCCTTCTCTACAATGTAATCAA
. : . : . : . : . : . :
JMSF039H05+ ACAACTCACCTGATTTCACATACTCCATCACAACATAGATATCTGTTGGTGTCTCTATGA
JMSF048H12+ ACAACTCACCTGATTTCACATACTCCATCACAACATAGATATCTGTTGGTGTCTCTATGA
JMSF040K17+ ACAACTCACCTGATTTCACATACTCCATCACAACATAGATATCTGTTGGTGTCTCTATGA
____________________________________________________________
consensus ACAACTCACCTGATTTCACATACTCCATCACAACATAGATATCTGTTGGTGTCTCTATGA
. : . : . : . : . : . :
JMSF039H05+ CCTCGTAAAGCCGTATGATATGAGGATGCATGAACAATCTCAGAATTTTGATTTCCCTTC
JMSF048H12+ CCTCGTAAAGCCGTATGATATGAGGATGCATGAACAATCTCAGAATTTTGATTTCCCTTC
JMSF040K17+ CCTCGTAAAGCCGTATGATATGAGGATGCATGAACAATCTCAGAATTTTGATTTCCCTTC
____________________________________________________________
consensus CCTCGTAAAGCCGTATGATATGAGGATGCATGAACAATCTCAGAATTTTGATTTCCCTTC
. : . : . : . : . : . :
JMSF039H05+ TAACTTTTTCTTCCATTTCCATATTTTTTATCTTTCGGCGATTAAGAATCTTGACAGCAA
JMSF048H12+ TAACTTTTTCTTCCATTTCCATATTTTTTATCTTTCGGCGATTAAGAATCTTGACAGCAA
JMSF040K17+ TAACTTTTTCTTCCATTTCCATATTTTTTATCTTTCGGCGATTAAGAATCTTGACAGCAA
____________________________________________________________
consensus TAACTTTTTCTTCCATTTCCATATTTTTTATCTTTCGGCGATTAAGAATCTTGACAGCAA
. : . : . : . : . : . :
JMSF039H05+ CTTTGTGCCCTGTCAATGCATGTTCAGCTATTTTAACTTTACCGAAGGACCCAATGCCAA
JMSF048H12+ CTTTGTGCCCTGTCAATGCATGTTCAGCTATTTTAACTTTACCGAAGGACCCAATGCCAA
JMSF040K17+ CTTTGTGCCCTGTCAATGCATGTTCAGCTATTTTAACTTTACCGAAGGACCCAATGCCAA
____________________________________________________________
consensus CTTTGTGCCCTGTCAATGCATGTTCAGCTATTTTAACTTTACCGAAGGACCCAATGCCAA
. : . : . : . : . : . :
JMSF039H05+ GAGTTTTCCCAAGCTTATAGTTCCTCAGGAACGAGTCCACATTACCACCACCTTGGGCAC
JMSF048H12+ GAGTTTTCCCAAGCTTATAGTTCCTCAGGAACGAGTCCACATTACCACCACCTTGGGCAC
JMSF040K17+ GAGTTTTCCCAAGCTTATAGTTCCTCAGGAACGAGTCCACATTACCACCACCTTGGGCAC
JMSF002B05+ TCAGGAACGAGTCCACATTACCACCACCTTGGGCAC
____________________________________________________________
consensus GAGTTTTCCCAAGCTTATAGTTCCTCAGGAACGAGTCCACATTACCACCACCTTGGGCAC
. : . : . : . : . : . :
JMSF039H05+ TTGATCCATCCATTCTCCGAGACGAAACGAACGGCAGCGAGCTCGGGAGAGAAGAGAATT
JMSF048H12+ TTGATCCATCCATTCTCCGAGACGAAACGAACGGCAGCGAGCTCGGGAGAGAAGAGAATT
JMSF040K17+ TTGATCCATCCATTCTCCGAGACGAAACGAACGGCAGCGAGCTCGGGAGAGAAGAGAATT
JMSF002B05+ TTGATCCATCCATTCTCCGAGACGAAACGAACGGCAGCGAGCTCGGGAGAGAAGAGAATT
____________________________________________________________
consensus TTGATCCATCCATTCTCCGAGACGAAACGAACGGCAGCGAGCTCGGGAGAGAAGAGAATT
. : . : . : . : . : . :
JMSF039H05+ CCGCGAAATGTATATACTCCTCTCCTATATATTCTTACGGAGTATACTAGGGAGAGAGAG
JMSF048H12+ CCGCGAAATGTATATACTCCTCTCCTATATATTCTTACGGAGTATACTAGGGAGAGAGAG
JMSF040K17+ CCGCGAAATGTATATACTCCTCTCCTATATATTCTTACGGAGTACACTAGGGAGAGAGAG
JMSF002B05+ CCGCGAAATGTATATACTCCTCTCCTATATATTCTTACGGAGTATACTAGGGAGAGAGAG
____________________________________________________________
consensus CCGCGAAATGTATATACTCCTCTCCTATATATTCTTACGGAGTATACTAGGGAGAGAGAG
. : . : . : . : . : . :
JMSF039H05+ AGAGAGATAGGGGAGTTCGAGAGAGCGCACGTTGAAAGAGTGAACCTCCAACAATGCGGA
JMSF048H12+ AGAGAGATAGGGGAGTTCGAGAGAGCGCACGTTGAAAGAGTGAACCTCCAACAATGCGGA
JMSF040K17+ AGAGAGATAGGGGAGTTCGAGAGAGCGCACGTTGAAAGAGTGAACCTCCAACAATGCGGA
JMSF002B05+ AGAGAGATAGGGGAGTTCGAGAGAGCGCACGTTGAAAGAGTGAACCTCCAACAATGCGGA
____________________________________________________________
consensus AGAGAGATAGGGGAGTTCGAGAGAGCGCACGTTGAAAGAGTGAACCTCCAACAATGCGGA
. : . : . : . : . : . :
JMSF039H05+ GAATGTGGCTGGGCAGCAG
JMSF048H12+ GAATGTGGCTGGGCAGCAG
JMSF040K17+ GAATGTGGCTGGGCAGCAGAAATGAGTTGAGTGCTTTCTGT
JMSF002B05+ GAATGTGGCTGGGCAGCAGAAATGAGTTGAGTGCCTTCTGTGTATCGTTAAAATTAGGCC
____________________________________________________________
consensus GAATGTGGCTGGGCAGCAGAAATGAGTTGAGTGCTTTCTGTGTATCGTTAAAATTAGGCC