Contig 013200:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005A21Sequence108013200 (5)
JMFF028A22Sequence519013200 (5)ref|XP_011069704.1|9e-56PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X1 [Sesamum737013200 (5)gb|KJB25243.1|1e-97hypothetical protein B456_004G182300 [Gossypium raimondii]
JMSF001L15Sequence303013200 (5)750013200 (5)gb|KJB25243.1|2e-105hypothetical protein B456_004G182300 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF028A22- TT
                      ____________________________________________________________
consensus TT
 
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rJMFF028A22- TGATTGACATCAACCTTTGATAAGTGAAGTAAAAAATAAAAATATTCAGTACTAGGAACA
rJMSF001L15- AAATATTCAGTACTAGGAACA
                      ____________________________________________________________
consensus TGATTGACATCAACCTTTGATAAGTGAAGTAAAAAATAAAAATATTCAGTACTAGGAACA
 
. : . : . : . : . : . :
rJMFF028A22- CTGGAGGACACAGGAATATCACTGTGAAACCCACAACACATTCAGCATATATATGGCAAG
rJMSF001L15- CTGGAGGACACAGGAATATCACTGTGAAACCCACAACACATTCAGCATATATATGGCAAG
                      ____________________________________________________________
consensus CTGGAGGACACAGGAATATCACTGTGAAACCCACAACACATTCAGCATATATATGGCAAG
 
. : . : . : . : . : . :
rJMFF028A22- TTATGCATAGAACTATAGCAGATTAGAAGATGATTTCACACCCTAGCTGCTGCTGCAGCT
rJMSF001L15- TTATGCATAGAACTATAGCAGATTAGAAGATGATTTCACACCCTAGCTGCTGCTGCAGCT
                      ____________________________________________________________
consensus TTATGCATAGAACTATAGCAGATTAGAAGATGATTTCACACCCTAGCTGCTGCTGCAGCT
 
. : . : . : . : . : . :
rJMFF028A22- TCCTTGATTTGCTCAATAGTGAAAACTCCAAAGCAGTCGTCGTCAGTGACAGCGTTTATC
rJMSF001L15- TCCTTGATTTGCTCAATAGTGAAAACTCCAAAGCAGTCGTCGTCAGTGACAGCGTTTATC
                      ____________________________________________________________
consensus TCCTTGATTTGCTCAATAGTGAAAACTCCAAAGCAGTCGTCGTCAGTGACAGCGTTTATC
 
. : . : . : . : . : . :
rJMFF028A22- GCTGCATAGGCAACATCATCAACACTAACCGGGGGAGCGAGAAGCAAATCGGAGGCAGGA
rJMSF001L15- GCTGCATAGGCAACATCATCAACACTAACCGGGGGAGCGAGAAGCAAATCGGAGGCAGGA
                      ____________________________________________________________
consensus GCTGCATAGGCAACATCATCAACACTAACCGGGGGAGCGAGAAGCAAATCGGAGGCAGGA
 
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rJMFF028A22- AGTGAGCTAAGAGGTTTAGTAAAGTTCTCTACAGCACTTAGTATTCTCTCAATTGGCTGC
rJMSF001L15- AGTGAGCTAAGAGGTTTAGTAAAGTTCTCTACAGCACTTAGTATTCTCTCAATTGGCTGC
                      ____________________________________________________________
consensus AGTGAGCTAAGAGGTTTAGTAAAGTTCTCTACAGCACTTAGTATTCTCTCAATTGGCTGC
 
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rJMFF028A22- CCTATCAAATCCAGAGGAATCTCAAAGCCATCAACCTTCCTCTTCCCATATATAAAGCCT
rJMSF001L15- CCTATCAAATCCAGAGGAATCTCAAAGCCATCAACCTTCCTCTTCCCATATATAAAGCCT
                      ____________________________________________________________
consensus CCTATCAAATCCAGAGGAATCTCAAAGCCATCAACCTTCCTCTTCCCATATATAAAGCCT
 
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rJMFF028A22- GGTCTTAAGACAACACCTGAGTTTGGATATTTGGAGAGGACCTCTGATTCTGCTTTCCTC
rJMSF001L15- GGTCTTAAGACAACACCTGAGTTTGGATATTTGGAGAGGACCTCTGATTCTGCTTTCCTC
                      ____________________________________________________________
consensus GGTCTTAAGACAACACCTGAGTTTGGATATTTGGAGAGGACCTCTGATTCTGCTTTCCTC
 
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rJMFF028A22- TTTCCTGTGAAGTAACCTGATGATAATAGAAAGGATGGGAGATTGTAATCGTGGACTGAG
rJMSF001L15- TTTCCTGTGAAGTAACCTGATGATAATAGAAAGGATGGGAGATTGTAATCGTGGACTGAG
                      ____________________________________________________________
consensus TTTCCTGTGAAGTAACCTGATGATAATAGAAAGGATGGGAGATTGTAATCGTGGACTGAG
 
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rJMFF028A22- ATCAAGATGAACTTTGGAATCCCATAATCTTTAGCAGCATTCACGGCCACTACATTTGCC
rJMSF001L15- ATCAAGATGAACTTTGGAATCCCATAATCTTTAGCAGCATTCACGGCCACTACATTTGCC
                      ____________________________________________________________
consensus ATCAAGATGAACTTTGGAATCCCATAATCTTTAGCAGCATTCACGGCCACTACATTTGCC
 
. : . : . : . : . : . :
rJMFF028A22- TCACCATTAATCCTTTTCATCTGTTCCTCACTTCCAAAACCCCCAAGTGTTGAAACAACT
rJMSF001L15- TCACCATTAATCCTTTTCATCTGTTCCTCACTTCCAAAACCCCCAAGTGTTGAAACAACT
JMFF028A22+ AACCCCCAAGTGTTGAAACAACT
                      ____________________________________________________________
consensus TCACCATTAATCCTTTTCATCTGTTCCTCACTTCCAAAACCCCCAAGTGTTGAAACAACT
 
. : . : . : . : . : . :
rJMFF028A22- GCTGTAGCCCCTAAAAGCACGTCATCCCAGTTTACGTAGAAAACATCACCTGAAATCCAA
rJMSF001L15- GCTGTAGCCCCTAAAAGCACGTCATCCCAGTTTACGTAGAAAACATCACCTGAAATCCAA
JMFF028A22+ GCTGTAGCCCCTAAAAGCACGTCATCCCAGTTTACGTAGAAAACATCACCNGAAATCCAA
                      ____________________________________________________________
consensus GCTGTAGCCCCTAAAAGCACGTCATCCCAGTTTACGTAGAAAACATCACCTGAAATCCAA
 
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rJMFF028A22- GTGACTTGATCTAGC
rJMSF001L15- GTGACTTGATCTAGCCATGATTCGGAGTATGAGGGACGGCCTGATCTG
JMFF028A22+ GTGACTTGATCTAGCCATGATTCGGAGTATGAGGGACGGCCTGATCTGCTCAGACTTATA
                      ____________________________________________________________
consensus GTGACTTGATCTAGCCATGATTCGGAGTATGAGGGACGGCCTGATCTGCTCAGACTTATA
 
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JMFF028A22+ ACCTCGACACCCTTGGACACTGCAGCTTTGCATATTGCAGAGCCAACAAAACCACTGCCT
                      ____________________________________________________________
consensus ACCTCGACACCCTTGGACACTGCAGCTTTGCATATTGCAGAGCCAACAAAACCACTGCCT
 
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JMFF028A22+ CCCAACACCACAATTCGCTCACTCTTCACATCAGCCACAACATCAATTGTCCCTGTGTTT
                      ____________________________________________________________
consensus CCCAACACCACAATTCGCTCACTCTTCACATCAGCCACAACATCAATTGTCCCTGTGTTT
 
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JMFF028A22+ GAATTTTCCCGTATACCAGCTCCAGAATAATTGCATCTGACACCAACCTTGCAAAAGCGA
                      ____________________________________________________________
consensus GAATTTTCCCGTATACCAGCTCCAGAATAATTGCATCTGACACCAACCTTGCAAAAGCGA
 
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JMFF028A22+ GGGCGAGAGAGTGAAGAATGTTGAGTGGTGAAGGAAGGAAACAGAGCTCTGCTCCGGCCG
JMSF001L15+ CCG
                      ____________________________________________________________
consensus GGGCGAGAGAGTGAAGAATGTTGAGTGGTGAAGGAAGGAAACAGAGCTCTGCTCCGGCCG
 
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JMFF028A22+ TGAAGAGACGGCGCCTTGGAAACGGCGCCGACGTAGCAGAGAGAGGTCGTCATCTTCGGC
JMFF005A21+ CGACGTAGCAGAGAGAGGTNGTCATCTTCGGC
JMSF001L15+ TGAAGAGACGGCGCCTTGGAAACGGCGCCGACGTAGCAGAGAGAGGTCGTCATCTTCGGC
                      ____________________________________________________________
consensus TGAAGAGACGGCGCCTTGGAAACGGCGCCGACGTAGCAGAGAGAGGTCGTCATCTTCGGC
 
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JMFF028A22+ TTCCGCTGCGGAGAAGAACACGAGAGAGAGAGAGAGAGAGATAGAGAGAGAACGAGGCGA
JMFF005A21+ TTCCNNNGCGGAGAAGANCNCNAGAGAGAGAGAGAGAGAGATAGAGAGAGAACGAGGCGA
JMSF001L15+ TTCCGCTGCGGAGAAGAACACGAGAGAGAGAGAGAGAGAGATAGAGAGAGAACGAGGCGA
                      ____________________________________________________________
consensus TTCCGCTGCGGAGAAGAACACGAGAGAGAGAGAGAGAGAGATAGAGAGAGAACGAGGCGA
 
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JMFF028A22+ CGGTTTCAGGCT
JMFF005A21+ CGGTTTCAGGCT
JMSF001L15+ CGGTTTCAGGCTTCTTCGAGCACCCTGAACAAAAAGAGAATCAAAAATACGAAGGAGAGA
                      ____________________________________________________________
consensus CGGTTTCAGGCTTCTTCGAGCACCCTGAACAAAAAGAGAATCAAAAATACGAAGGAGAGA
 
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JMSF001L15+ AGGCTGTAAGAGTGGCAAAAATTCAATTGTGAAAGAGATTTTGGTAAGCTTTGTGGCGCC
                      ____________________________________________________________
consensus AGGCTGTAAGAGTGGCAAAAATTCAATTGTGAAAGAGATTTTGGTAAGCTTTGTGGCGCC
 
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JMSF001L15+ AGATTTGGGAGTGTTTATATGGTGGTCGTCACTCCTCACGCTTCTGAAGCTTTCATTTCC
                      ____________________________________________________________
consensus AGATTTGGGAGTGTTTATATGGTGGTCGTCACTCCTCACGCTTCTGAAGCTTTCATTTCC