Contig 013199:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-                                            AAGGAGATGGAGTTGTCTAACAGAAC
                      ____________________________________________________________
consensus                                               AAGGAGATGGAGTTGTCTAACAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          TCCACAGATAAAATGTAGGACCAACTTTGAGTTTCTTGAGTTCCTTCAGGTGGCTTTTAA
                      ____________________________________________________________
consensus             TCCACAGATAAAATGTAGGACCAACTTTGAGTTTCTTGAGTTCCTTCAGGTGGCTTTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          CTTGTTCAAACCATATGTTTCCAGAACATTGTGAATTTCTTGTAAAACAGGTACTAATAA
JMSF039O02+                                               TTCTTGTAAAACAGGTACTAATAA
                      ____________________________________________________________
consensus             CTTGTTCAAACCATATGTTTCCAGAACATTGTGAATTTCTTGTAAAACAGGTACTAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          TGAAACCACGGTGCGGATTTCCTTGTTAAGGTTGTCATTACTGTTATTTTCTTGTTTGCT
JMSF039O02+           TGAAACCACGGTGCGGATTTCCTTGTTAAGGTNGTCATTACTGTTATTTTCTTGTTTGCT
                      ____________________________________________________________
consensus             TGAAACCACGGTGCGGATTTCCTTGTTAAGGTTGTCATTACTGTTATTTTCTTGTTTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          CATCAGGATCCTCATCAAACTTGTGCTGTCTGGCACAAGTTTTACGGCTATCCCATAGGC
JMSF039O02+           CATCAGGATCCTCATCAAACTTGTGCTGTATGGCACAAGTTTTACGGCTATCCCATAGGC
                      ____________________________________________________________
consensus             CATCAGGATCCTCATCAAACTTGTGCTGTCTGGCACAAGTTTTACGGCTATCCCATAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          AGCAGAAGAAATCCAACCATGCCATGGCTTGAGAGTGATGTTATACGACTCTTCCACTGC
JMSF039O02+           AGCAGAAGAAATCCAACCATGCCATGGCTTGAGAGTGATGTTATACGACTCTTCCACTGC
                      ____________________________________________________________
consensus             AGCAGAAGAAATCCAACCATGCCATGGCTTGAGAGTGATGTTATACGACTCTTCCACTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          TTTTTCCATGTTCCTTTCCGGATCTTCTACCAGTAATTTCAGCAGAGCTGAGGTGAAGTC
JMSF039O02+           TTTTTCCATGTTCCTTTCCGGATCTTCTACCAGTAATTTCAGCAGAGCTGAGGTGAAGTC
                      ____________________________________________________________
consensus             TTTTTCCATGTTCCTTTCCGGATCTTCTACCAGTAATTTCAGCAGAGCTGAGGTGAAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          CAGTGATCTGGTGAGCCAAACCAAGGCTTTACTGCAGCTGGGACCCTTCTTCGCACTTCC
JMSF039O02+           CAGTGATCTGGTGAGCCAAACCAAGGCTTTACTGCAGCTGGGACCCTTCTTCGCACTTCC
                      ____________________________________________________________
consensus             CAGTGATCTGGTGAGCCAAACCAAGGCTTTACTGCAGCTGGGACCCTTCTTCGCACTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          TTCATTTCTCTCCTTCTTCAAAATCTCCACCATATTTGAATACAATGAAGGATCTGAATC
JMSF039O02+           TTCATTTCTCTCCTTCTTCAAAATCTCCACCATATTTGAATACAATGAAGGATCTGAATC
                      ____________________________________________________________
consensus             TTCATTTCTCTCCTTCTTCAAAATCTCCACCATATTTGAATACAATGAAGGATCTGAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          ATACAACTTCTCCAATCTCTGGATATTTTGATGTACATCTTGTCTCAGAACAAACATTGT
JMSF039O02+           ATACAACTTCTCCAATCTCTGGATATTTTGATGTACATCTTGTCTCAGAACAAACATTGT
                      ____________________________________________________________
consensus             ATACAACTTCTCCAATCTCTGGATATTTTGATGTACATCTTGTCTCAGAACAAACATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          TGGTCCAATCTTATCAAGAACCTGAATAAGGCAGTTGCAGATAGAGAGAAAAGGCTTAGT
JMSF039O02+           TGGTCCAATCCTATCAAGAACCTGAATAAGGCAGTTGCAGATAGAGAGAAAAGGCTTAGT
JMSF001H03+                      TATCAAGAACCTGAATAAGGCAGTTGCAGATAGAGAGAAAAGGCTTAGT
                      ____________________________________________________________
consensus             TGGTCCAATCTTATCAAGAACCTGAATAAGGCAGTTGCAGATAGAGAGAAAAGGCTTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          GGGAATATGCAGAGTGGTGTCATAATCGCTACCAGCTTTGCCTTTGATCAAAACCATGCT
JMSF039O02+           GGGAATATGCAGAGTGGTGTCATAATCGCTACCAGCTTTGCCTTTGATCAAAACCATGCT
JMSF001H03+           GGGAATATGCAGAGTGGTGTCATAATCGCTACCAGCTTTGCCTTTGATCAAAACCATGCT
                      ____________________________________________________________
consensus             GGGAATATGCAGAGTGGTGTCATAATCGCTACCAGCTTTGCCTTTGATCAAAACCATGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001H03-          GGATAGCTCTTCAATGGCACACTTCATTTCTGAAGCCCCCATCTCCATTTCCC       
JMSF039O02+           GGATAGCTCTTCAATGGCACACTTCATTTCTGAAGCCCCCATCTCCATTTCCCTTTTCCT
JMSF001H03+           GGATAGCTCTTCAATGGCACACTTCATTTCTGAAGCCCCCATCTCCATTTCCCTTTTCCT
                      ____________________________________________________________
consensus             GGATAGCTCTTCAATGGCACACTTCATTTCTGAAGCCCCCATCTCCATTTCCCTTTTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039O02+           CTTCATTATATTCAATTCCTTCCTGATTCTTGCTGTTTCAATAACACACACA        
JMSF001H03+           CTTCATTATATTCAATTCCTTCCTGATTCTTGCTGTTTCAATAACACACACATATTTATA
                      ____________________________________________________________
consensus             CTTCATTATATTCAATTCCTTCCTGATTCTTGCTGTTTCAATAACACACACATATTTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001H03+           TATAAACACATGTATACATCATATCACCCAACTAGGAGCTAAAAAATCCTAAAGAATTGC
                      ____________________________________________________________
consensus             TATAAACACATGTATACATCATATCACCCAACTAGGAGCTAAAAAATCCTAAAGAATTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001H03+           AGTACTAGCTAGCTGTTGACTAGAGAAATCTTGTACTGGGTTTTACACCGTCTATCAATC
                      ____________________________________________________________
consensus             AGTACTAGCTAGCTGTTGACTAGAGAAATCTTGTACTGGGTTTTACACCGTCTATCAATC