Contig 013193:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS163D12Sequence577013193 (2)ref|XP_009797690.1|7e-37PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Nicoti
JMSF047D20Sequence687013080 (9)emb|CDP07440.1|1e-48unnamed protein product [Coffea canephora]634013193 (2)ref|XP_009797690.1|1e-44PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Nicoti

Alignment

This contig is upended


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rJMSF047D20+              AAGAGTTCCTCGTGATGTTTGATGATCCTGATTGGGGTTTTGGTATTATGAACACC
                      ____________________________________________________________
consensus                 AAGAGTTCCTCGTGATGTTTGATGATCCTGATTGGGGTTTTGGTATTATGAACACC
 
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rJMSF047D20+          TTATTGAAGCNTGAAGTTGGGGACNGGAATNGTCATGGCAGCCANTGCTGNGCAACTTGC
JMFS163D12+                                    GGAATCGTCATGGCAGCCATTGCTGTGCAACTTGC
                      ____________________________________________________________
consensus             TTATTGAAGCNTGAAGTTGGGGACNGGAATCGTCATGGCAGCCATTGCTGTGCAACTTGC
 
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rJMSF047D20+          CGCTACCCTATCATTGGATCACGNTTCAAGGAAACGAAATCNCACATCAGCTTGNGTAGC
JMFS163D12+           CGCTACCCTATCATTGGATCACGCTTCAAGGAAACGAAATCACACATCAGCTTGTGTAGC
                      ____________________________________________________________
consensus             CGCTACCCTATCATTGGATCACGCTTCAAGGAAACGAAATCACACATCAGCTTGTGTAGC
 
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rJMSF047D20+          CAATGTTACAGCGAAGGAAAAGTACCCCCCNCCTGCAAGCAGGAAGAGTATAAATTCAAA
JMFS163D12+           CAATGTTACAGCGAAGGAAAAGTACCCCCCACCTGCAAGCATGAAGAGTATAAATTCAAA
                      ____________________________________________________________
consensus             CAATGTTACAGCGAAGGAAAAGTACCCCCCACCTGCAAGCATGAAGAGTATAAATTCAAA
 
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rJMSF047D20+          GAATACGCGAGTGGGTTTGANGCAGTGAAAGATAAANGTATGTGGTTTGGTATGCNCTCG
JMFS163D12+           GAATACGCGAGTGGGTCTGATGCAGTGAAAGATAAATGTATGTGGTTTGGTATGCACTCG
                      ____________________________________________________________
consensus             GAATACGCGAGTGGGTTTGATGCAGTGAAAGATAAATGTATGTGGTTTGGTATGCACTCG
 
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rJMSF047D20+          AAAAGTTTTTNTCCCGNTGCCACAACTGCCNCCAGCTAGNTAGTCAAGTTCGNGTNTTAT
JMFS163D12+           AAAAGTTCTTCTCCCGCTGCCACAACTGCCACCAGCTAGCTAGTCAAGTTCGCGTCTTAT
                      ____________________________________________________________
consensus             AAAAGTTTTTCTCCCGCTGCCACAACTGCCACCAGCTAGCTAGTCAAGTTCGCGTCTTAT
 
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rJMSF047D20+          TGACNCTCGNGTACTNTTTTTTGCATCGNGTTTAGCTGTTCGAGTTCAGNGGATTCATGA
JMFS163D12+           TGACACTCGTGTACTCTTTTCTGCATCGTGTTTAGCTGTTCGAGTTCAGTGGATTCATGA
                      ____________________________________________________________
consensus             TGACACTCGTGTACTCTTTTTTGCATCGTGTTTAGCTGTTCGAGTTCAGTGGATTCATGA
 
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rJMSF047D20+          TNTTGTACAATAATCCNTTNTTTTGTCTTTCCCNCTGTAGAAAACTTGNGGNTCTTTTCC
JMFS163D12+           TCTTGTACAATAATCCATTCTTTTGTCTTTCCCACTGTAGAAAACTTGTGGCTCTTTTCC
                      ____________________________________________________________
consensus             TCTTGTACAATAATCCATTCTTTTGTCTTTCCCACTGTAGAAAACTTGTGGCTCTTTTCC
 
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rJMSF047D20+          GGGNGGGTTCTTTTCGTTNTTCTAACTCCTTAGAAGGTCCNTGAATTGTTTCTTGAGTNT
JMFS163D12+           GGGTGGGTTCTTTTCGTTCTTCTAACTCCTTAGAAGGTCCATGAATTGTTTCTTGAGTCT
                      ____________________________________________________________
consensus             GGGTGGGTTCTTTTCGTTCTTCTAACTCCTTAGAAGGTCCATGAATTGTTTCTTGAGTCT
 
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rJMSF047D20+          GCTCACNTGGNGTAAAGTTTTTATTTTTCCNTTGAAACCNNGTACCNTTCTNTGATCTTG
JMFS163D12+           GCTCACTTGGTGTAAAGTTTTTATTTTTCCATTG-AACCATGTACCTTTCTCTGATCTTG
                      ____________________________________________________________
consensus             GCTCACTTGGTGTAAAGTTTTTATTTTTCCATTGAAACCATGTACCTTTCTCTGATCTTG
 
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rJMSF047D20+          ACTATGCATCAAGTTTACCNGTGTAAA                                 
JMFS163D12+           ACTATGCATCAAGTTTACCTGTGTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTC
                      ____________________________________________________________
consensus             ACTATGCATCAAGTTTACCTGTGTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTC