Contig 013115:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS057D07Sequence627013115 (2)emb|CDF59677.1|5e-124phya phya phya phya phya protein, partial [Pergularia tomentosa]
JMFS140A05Sequence624013115 (2)gb|AJA72481.1|6e-133phytochrome A [Ipomoea purpurea]

Alignment

This contig is upended


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JMFS140A05+                                                             TCGGTTGGGG
                      ____________________________________________________________
consensus                                                               TCGGTTGGGG
 
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JMFS140A05+           TAATCCCCAATCTGTGTACCTTATTCTTATACAGCAAAGCAGCGCCATCGCATTTGATAA
JMFS057D07+                                           AGCAAAGCAGCGCCATCGCATTTGATAA
                      ____________________________________________________________
consensus             TAATCCCCAATCTGTGTACCTTATTCTTATACAGCAAAGCAGCGCCATCGCATTTGATAA
 
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JMFS140A05+           GATCCATTATATTGGGGCTCTGTGACACGATACCCAGTGGGGCATCTCGCATTAACATAT
JMFS057D07+           GATCCATTATA-TGGGGCTCTGTGACACGATACCCAGTGGGGCATCTCGCATTAACATAT
                      ____________________________________________________________
consensus             GATCCATTATATTGGGGCTCTGTGACACGATACCCAGTGGGGCATCTCGCATTAACATAT
 
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JMFS140A05+           CACACAAGAGAGTTTGAGTGCGGAGAATGTTTTTCTCGACAATCTGGTTTTCTAATTCTA
JMFS057D07+           CACACAAGAGAGTTTGAGTGCGGAGAATGTTTTTCTCGACAATCTGGTTTTCTAATTCTA
                      ____________________________________________________________
consensus             CACACAAGAGAGTTTGAGTGCGGAGAATGTTTTTCTCGACAATCTGGTTTTCTAATTCTA
 
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JMFS140A05+           GTTCCTTGTTGACATGAATGGCGAACACCTGTGAAAGGAACTCACATGCATACCGAAGAG
JMFS057D07+           GTTCCTTGTTGACATGAATGGCGAACACCTGTGAAAGGAACTCACATGCATACCGAAGAG
                      ____________________________________________________________
consensus             GTTCCTTGTTGACATGAATGGCGAACACCTGTGAAAGGAACTCACATGCATACCGAAGAG
 
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JMFS140A05+           GAAAAGGAACGAACCTTGGAGTCGTGTTATGGCATACGATTAGGCCCCAAAGCCTTTTCC
JMFS057D07+           GAAAAGGAACGAACCTTGGAGTCGTGTTATGGCATACGATTAGGCCCCAAAGCCTTTTCC
                      ____________________________________________________________
consensus             GAAAAGGAACGAACCTTGGAGTCGTGTTATGGCATACGATTAGGCCCCAAAGCCTTTTCC
 
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JMFS140A05+           TCTTCTGTATCCGTCCAGATTCTGAGGTCTCCCCTTCTTCATCTCCATCGTTAACTACAA
JMFS057D07+           TCTTCTGTATCCGTCCAGATTCTGAGGTCTCCCCTTCTTCATCTCCATCGTTAACTACAA
                      ____________________________________________________________
consensus             TCTTCTGTATCCGTCCAGATTCTGAGGTCTCCCCTTCTTCATCTCCATCGTTAACTACAA
 
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JMFS140A05+           CTGCCATTACCAGTGACGCTATTGAATTCATATTCTCCATGTACTGCAAATGACAGGTGT
JMFS057D07+           CTGCCATTACCAGTGACGCTATTGAATTCATATTCTCCATGTACTGCAAATGACAGGTGT
                      ____________________________________________________________
consensus             CTGCCATTACCAGTGACGCTATTGAATTCATATTCTCCATGTACTGCAAATGACAGGTGT
 
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JMFS140A05+           GAGGAGCTCTAAGCGTGGAACCACACAATGTTAAATCAATCGAAAGTTTCTCATCTTGGA
JMFS057D07+           GAGGAGCTCTAAGCGTGGAACCACACAATGTTAAATCAATCGAAAGTTTCTCATCTTGGA
                      ____________________________________________________________
consensus             GAGGAGCTCTAAGCGTGGAACCACACAATGTTAAATCAATCGAAAGTTTCTCATCTTGGA
 
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JMFS140A05+           CCACCCTGACATGTTTTGCTCGGCAATCACAAATCATCCGTACTTTGTTCTTCATGAACA
JMFS057D07+           CCACCCTGACATGTTTTGCTCGGCAATCACAAATCATCCGTACTTTGTTCTTCATGAACA
                      ____________________________________________________________
consensus             CCACCCTGACATGTTTTGCTCGGCAATCACAAATCATCCGTACTTTGTTCTTCATGAACA
 
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JMFS140A05+           AAAAGCGTGAAGCTTGAGGAATATCGGTTGCTGGATAATGCAAGCCCAAGTAAGGCTCAA
JMFS057D07+           AAAAGCGTGAAGCTTGAGGAATATCGGTTGCTGGATAATGCAAGCCCAAGTAAGGCTCAA
                      ____________________________________________________________
consensus             AAAAGCGTGAAGCTTGAGGAATATCGGTTGCTGGATAATGCAAGCCCAAGTAAGGCTCAA
 
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JMFS140A05+           GGCCAGGCTTAGTG                                              
JMFS057D07+           GGCCAGGCTTAGTGATCTCAGAAACAACCTCTCCGTGATCATCGTCATGAAATTTATAAA
                      ____________________________________________________________
consensus             GGCCAGGCTTAGTGATCTCAGAAACAACCTCTCCGTGATCATCGTCATGAAATTTATAAA