Contig 013104:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS043E07Sequence619013104 (2)ref|XP_006351888.1|4e-05PREDICTED: DIS3-like exonuclease 2-like [Solanum tuberosum]
JMFS107H01Sequence615013104 (2)ref|XP_008385572.1|2e-09PREDICTED: DIS3-like exonuclease 2 isoform X2 [Malus domestica]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS107H01+ GCATCAACATCTTC
                      ____________________________________________________________
consensus GCATCAACATCTTC
 
. : . : . : . : . : . :
JMFS107H01+ AGTCAACCAGTGTCTAGTAAAGCATTTCCTCTGAGCAAATGCATTATCCGGTGTGGACAA
                      ____________________________________________________________
consensus AGTCAACCAGTGTCTAGTAAAGCATTTCCTCTGAGCAAATGCATTATCCGGTGTGGACAA
 
. : . : . : . : . : . :
JMFS107H01+ CATTAGTTCTCCATTAGCATCATTGCAAAGACTGGGCTGTGGGCAAGAGCCTGAAAATAC
JMFS043E07+ GGCAAGAGCCTGAAAATAC
                      ____________________________________________________________
consensus CATTAGTTCTCCATTAGCATCATTGCAAAGACTGGGCTGTGGGCAAGAGCCTGAAAATAC
 
. : . : . : . : . : . :
JMFS107H01+ TCTTCCAGTGGCACTCGATGAAATCATCTCCTGTCCTACAAGGCCTTGGTACCCCTTTAC
JMFS043E07+ TCTTCCAGTGGCACTCGATGAAATCATCTCCTGTCCTACAAGGCCTTGGTACCCCTTTAC
                      ____________________________________________________________
consensus TCTTCCAGTGGCACTCGATGAAATCATCTCCTGTCCTACAAGGCCTTGGTACCCCTTTAC
 
. : . : . : . : . : . :
JMFS107H01+ TGTTTGTTCATTCAGATGCACAATTGGAAGTGAACTAAAAGCAACATCTGATGCTCTTGG
JMFS043E07+ TGTTTGTTCATTCAGATGCACAATTGGAAGTGAACTAAAAGCAACATCTGATGCTCTTGG
                      ____________________________________________________________
consensus TGTTTGTTCATTCAGATGCACAATTGGAAGTGAACTAAAAGCAACATCTGATGCTCTTGG
 
. : . : . : . : . : . :
JMFS107H01+ GAATTGGTGTTCTCTAAGCTCTCCATTATTTGAAATGTTTTCAACTCCTGAACGAAGAGG
JMFS043E07+ GAATTGGTGTTCTCTAAGCTCTCCATTATTTGAAATGTTTTCAACTCCTGAACGAAGAGG
                      ____________________________________________________________
consensus GAATTGGTGTTCTCTAAGCTCTCCATTATTTGAAATGTTTTCAACTCCTGAACGAAGAGG
 
. : . : . : . : . : . :
JMFS107H01+ AGAACTCTGCTTGCCACGCCTGGATCGACGCTTCTTCTTCTTATCCTTGTTATCGACAGC
JMFS043E07+ AGAACTCTGCTTGCCACGCCTGGATCGACGCTTCTTCTTCTTATCCTTGTTATCGACAGC
                      ____________________________________________________________
consensus AGAACTCTGCTTGCCACGCCTGGATCGACGCTTCTTCTTCTTATCCTTGTTATCGACAGC
 
. : . : . : . : . : . :
JMFS107H01+ GACAGCTTCAACTGTCTGTGCTTGACTGTGAATAGACTCAACCAGGACACCCATGTCTCG
JMFS043E07+ GACAGCTTCAACTGTCTGTGCTTGACTGTGAATAGACTCAACCAGGACACCCATGTCTCG
                      ____________________________________________________________
consensus GACAGCTTCAACTGTCTGTGCTTGACTGTGAATAGACTCAACCAGGACACCCATGTCTCG
 
. : . : . : . : . : . :
JMFS107H01+ AGAACAAATCAGAAGAACTCAAGAACCGCAAAAGGGAAATAAAATTTTTTTTAAAAAAAA
JMFS043E07+ AGAACAAATCAGAAGAACTCAAGAACCGCAAAAGGGAAATAAAATTTTTTTTAAAAAAAA
                      ____________________________________________________________
consensus AGAACAAATCAGAAGAACTCAAGAACCGCAAAAGGGAAATAAAATTTTTTTTAAAAAAAA
 
. : . : . : . : . : . :
JMFS107H01+ CAGTAAAGCAAAAACCCAAGCAAG-AAAAAACCCTATAAGCTTGCGATAGGGGAATCGAG
JMFS043E07+ CAGTAAAGCAAAAACCCAAGCAAGAAAAAAACCCTATAAGCTTGCGATAGGGGAATCGAG
                      ____________________________________________________________
consensus CAGTAAAGCAAAAACCCAAGCAAGAAAAAAACCCTATAAGCTTGCGATAGGGGAATCGAG
 
. : . : . : . : . : . :
JMFS107H01+ CAGCTTCCGGTTTATGAAAAAAATTAAACGGAAGAAACCCGATTTCGAGGATTCTTAACA
JMFS043E07+ CAGCTTCCGGTTTATGAAAAAAATTAAACGGAAGAAACCCGATTTCGAGGATTCTTAACA
                      ____________________________________________________________
consensus CAGCTTCCGGTTTATGAAAAAAATTAAACGGAAGAAACCCGATTTCGAGGATTCTTAACA
 
. : . : . : . : . : . :
JMFS107H01+ AA
JMFS043E07+ AAGAAGAAACGGTAATCCGAGAAACAGAGGGAAGAAATCACGTATAGAGATTTATATATA
                      ____________________________________________________________
consensus AAGAAGAAACGGTAATCCGAGAAACAGAGGGAAGAAATCACGTATAGAGATTTATATATA
 
. : . : . : . : . : . :
JMFS043E07+ TAGATATAGATATACGGAGTATAAAATACGTGCTTTAAAGAGAGAGAGAGGGAGAGAGAA
                      ____________________________________________________________
consensus TAGATATAGATATACGGAGTATAAAATACGTGCTTTAAAGAGAGAGAGAGGGAGAGAGAA