Contig 013103:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS040C12Sequence608013103 (2)ref|XP_009771867.1|1e-44PREDICTED: TMV resistance protein N-like [Nicotiana sylvestris]
JMFS040D02Sequence544013103 (2)ref|XP_006349259.1|3e-23PREDICTED: TMV resistance protein N-like isoform X1 [Solanum tuberosum] ref|XP_

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS040C12+ CGCTCTTC
                      ____________________________________________________________
consensus CGCTCTTC
 
. : . : . : . : . : . :
JMFS040C12+ ATATTAAGAAATGCATCTGCATAGCATCCTGTTTGTTTCCTCACATGGGATGGATCCACA
                      ____________________________________________________________
consensus ATATTAAGAAATGCATCTGCATAGCATCCTGTTTGTTTCCTCACATGGGATGGATCCACA
 
. : . : . : . : . : . :
JMFS040D02+ AAGAATCATATGACCCGCATTTTGTTTCCGCTCAAGAATGTTCTCA
JMFS040C12+ TTGTAGAACACAGGAAGAATCATATGACCCGCATTTTTTTTCCGCTCAAGAATGTTCACA
                      ____________________________________________________________
consensus TTGTAGAACACAGGAAGAATCATATGACCCGCATTTTTTTTCCGCTCAAGAATGTTCTCA
 
. : . : . : . : . : . :
JMFS040D02+ AGTTCATCGAGGCACCTTCTGGAATAGGCATAGTCCATTGACAAAACGATTATAGGAACT
JMFS040C12+ AGTTCATCGAGGCACCTTCTTGAATATGCATAGTCTATTGAGAAAACGATTATAGAAACT
                      ____________________________________________________________
consensus AGTTCATCGAGGCACCTTCTTGAATATGCATAGTCTATTGAGAAAACGATTATAGGAACT
 
. : . : . : . : . : . :
JMFS040D02+ CTTGAGTCGTTTACTGCCTGTCTCCATTCGTGTCCGCAGATCTTTCCCTTCTCTAGTGGA
JMFS040C12+ CTTGAGTCTTTTACTGCCTTTCTCCATTCTTGTCCACAGATCTTTCCCTTCTCTAGTTGA
                      ____________________________________________________________
consensus CTTGAGTCTTTTACTGCCTTTCTCCATTCTTGTCCGCAGATCTTTCCCTTCTCTAGTTGA
 
. : . : . : . : . : . :
JMFS040D02+ TTGTGCTTTTTAAATGTTTGAAATCCTGAAGGTGTTAATTCTCTATGTCATAGCTCGATA
JMFS040C12+ TTGTGCTTCTTAAATGTTTGAAATCCTGAACGTGTTAATTCTCTATGTAATAGATCAATA
                      ____________________________________________________________
consensus TTGTGCTTTTTAAATGTTTGAAATCCTGAAGGTGTTAATTCTCTATGTCATAGCTCGATA
 
. : . : . : . : . : . :
JMFS040D02+ AACTCCAATCGGGCGTCTGTGCCCCGATCACCCATAGGCACATGGCAAGTATAGTGGGAT
JMFS040C12+ AATTCCAAACAGGTGTCTGTGCCCCGATAACTCAAATACACATGACAAGTATAGTGGGAT
                      ____________________________________________________________
consensus AATTCCAATCGGGTGTCTGTGCCCCGATCACTCATATGCACATGGCAAGTATAGTGGGAT
 
. : . : . : . : . : . :
JMFS040D02+ CATACTGCATCCATTGATCACAGCTCCAAGGTGGCATAGTGCTCTGCCCGTGCTAAAGAT
JMFS040C12+ GATACTGCAACCATTGATCAGAACTCCAAGGTGGCAAAGTGCTTTGACCTTGATAAAGAT
                      ____________________________________________________________
consensus GATACTGCATCCATTGATCAGAGCTCCAAGGTGGCATAGTGCTTTGCCCTTGCTAAAGAT
 
. : . : . : . : . : . :
JMFS040D02+ TGGCCGAATTTTGTTAAATCAAGAAAATAGTTGTAG
JMFS040C12+ TGGCCGGATTTTGTAAGATGAAGAAAATAGTTGTAGCTGAGATACGTGAGTTATTATAAT
                      ____________________________________________________________
consensus TGGCCGGATTTTGTTAGATGAAGAAAATAGTTGTAGCTGAGATACGTGAGTTATTATAAT
 
. : . : . : . : . : . :
JMFS040C12+ AAAAATAAAATAATAAAAGCGATTGCAAATTTGAAAGAAAGTGAGAGGAAGGACAAGAGG
                      ____________________________________________________________
consensus AAAAATAAAATAATAAAAGCGATTGCAAATTTGAAAGAAAGTGAGAGGAAGGACAAGAGG
 
. : . : . : . : . : . :
JMFS040C12+ ATACAACGGAAAAGCTTCGGTCGTTGACGCGTCAGTCAACGCAGTTTCCAGATCATCTAG
                      ____________________________________________________________
consensus ATACAACGGAAAAGCTTCGGTCGTTGACGCGTCAGTCAACGCAGTTTCCAGATCATCTAG