Contig 013058:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015C10Sequence210013058 (5)
JMFN004M17Sequence500013058 (5)
JMFN010F16Sequence501013058 (5)
JMFN028D07Sequence471013058 (5)
JMFN040K12Sequence490013058 (5)

Alignment

This contig is upended


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JMCP015C10+                                               ACCACAAATGGATTATTAAAGTTG
JMFN028D07+                                                         GATTATTAAAGTTG
JMFN004M17+                                               ACCACAAATGGATTATTAAAGTTG
JMFN010F16+                                               ACCACAAATGGATTATTAAAGTTG
JMFN040K12+                                                             ATTAAAGTTG
                      ____________________________________________________________
consensus                                                 ACCACAAATGGATTATTAAAGTTG
 
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JMCP015C10+           AATTGCACATTATTGAACGTGGCCATATATAGGCCTACATGCATTATACATATTATTTAT
JMFN028D07+           AATTGCACATTATTGAACGTGGCCATATATAGGCCTACATGCATTATACATATTATTTAT
JMFN004M17+           AATTGCACATTATTGAACGTGGCCATATATAGGCCTACATGCATTATACATATTATTTAT
JMFN010F16+           AATTGCACATTATTGAACGTGGCCATATATAGGCCTACATGCATTATACATATTATTTAT
JMFN040K12+           AATTGCACATTATTGAACGTGGCCATATATAGGCCTACATGCATTATACATATTATTTAT
                      ____________________________________________________________
consensus             AATTGCACATTATTGAACGTGGCCATATATAGGCCTACATGCATTATACATATTATTTAT
 
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JMCP015C10+           CATCACACGTATCATAAGAAGTAATTAAGTAGAGATAATTAAGATTAAATAGCATAATCT
JMFN028D07+           CATCACACGTATCATAAGAAGTAATTAAGTAGAGATAATTAAGATTAAATAGCATAATCT
JMFN004M17+           CATCACACGTATCATAAGAAGTAATTAAGTAGAGATAATTAAGATTAAATAGCATAATCT
JMFN010F16+           CATCACACGTATCATAAGAAGTAATTAAGTAGAGATAATTAAGATTAAATAGCATAATCT
JMFN040K12+           CATCACACGTATCATAAGAAGTAATTAAGTAGAGATAATTAAGATTAAATAGCATAATCT
                      ____________________________________________________________
consensus             CATCACACGTATCATAAGAAGTAATTAAGTAGAGATAATTAAGATTAAATAGCATAATCT
 
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JMCP015C10+           GCCTTGCCCTTGGGATTTATTGTTGTAGTAATAAGTATATAAATTAAATTATTCATTCCT
JMFN028D07+           GCCTTGCCCTTGGGATTTATTGTTGTAGTAATAAGTATATAAATTAAATTATTCATTCCT
JMFN004M17+           GCCTTGCCCTTGGGATTTATTGTTGTAGTAATAAGTATATAAATTAAATTATTCATTCCT
JMFN010F16+           GCCTTGCCCTTGGGATTTATTGTTGTAGTAATAAGTATATAAATTAAATTATTCATTCCT
JMFN040K12+           GCCTTGCCCTTGGGATTTATTGTTGTAGTAATAAGTATATAAATTAAATTATTCATTCCT
                      ____________________________________________________________
consensus             GCCTTGCCCTTGGGATTTATTGTTGTAGTAATAAGTATATAAATTAAATTATTCATTCCT
 
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JMCP015C10+           CGAGCC                                                      
JMFN028D07+           CGAGCCTAGCAGGAGACTAAGGGGAAGAGAAAATGCCAAAGGATACAAGTTGCCCTTAAT
JMFN004M17+           CGAGCCTAGCAGGAGACTAAGGGGAAGAGAAAATGCCAAAGGATACAAGTTGCCCTTAAT
JMFN010F16+           CGAGCCTAGCAGGAGACTAAGGGGAAGAGAAAATGCCAAAGGATACAAGTTGCCCTTAAT
JMFN040K12+           CGAGCCTAGCAGGAGACTAAGGGGAAGAGAAAATGCCAAAGGATACAAGTTGCCCTTAAT
                      ____________________________________________________________
consensus             CGAGCCTAGCAGGAGACTAAGGGGAAGAGAAAATGCCAAAGGATACAAGTTGCCCTTAAT
 
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JMFN028D07+           TTTCAAGTAACCTATACTCATACTATATATATATAGTACCATCACGCCTTCAACATCACG
JMFN004M17+           TTTCAAGTAACCTATACTCATACTATATATATATAGTACCATCACGCCTTCAACATCACG
JMFN010F16+           TTTCAAGTAACCTATACTCATACTATATATATATAGTACCATCACGCCTTCAACATCACG
JMFN040K12+           TTTCAAGTAACCTATACTCATACTATATATATATAGTACCATCACGCCTTCAACATCACG
                      ____________________________________________________________
consensus             TTTCAAGTAACCTATACTCATACTATATATATATAGTACCATCACGCCTTCAACATCACG
 
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JMFN028D07+           GGTGGTGGGTGACCGTGACGACTCAGCCCGCTGTTCCGATGATGTTCAAACGTTGTACCT
JMFN004M17+           GGTGGTGGGTGACCGTGACGACTCAGCCCGCTGTTCCGATGATGTTCAAACGTTGTACCT
JMFN010F16+           GGTGGTGGGTGACCGTGACGACTCAGCCCG-TGTTCCGATGATGTTCAAACGTTGTACCT
JMFN040K12+           GGTGGTGGGTGACCGTGACGACTCAGCCCGCTGTTCCGATGATGTTCAAACGTTGTACCT
                      ____________________________________________________________
consensus             GGTGGTGGGTGACCGTGACGACTCAGCCCGCTGTTCCGATGATGTTCAAACGTTGTACCT
 
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JMFN028D07+           CCGAGGCAGCTTTCTCCCGGTCACCCGGCGGCTGAAGAAGCCACCCTTGCCCCCATCGGA
JMFN004M17+           CCGAGGCAGCTTTCTCCCGGTCACCCGGCGGCTGAAGAAGCCACCCTTGCCCCCATCGGA
JMFN010F16+           CCGAGGCAGCTTTCTCCCGGTCACCCGGCGGCTGAAGAAGCCACCCTTGCCCCCATCGGA
JMFN040K12+           CCGAGGCAGCTTTCTCCCGGTCACCCGGCGGCTGAAGAAGCCACCCTTGCCCCCATCGGA
                      ____________________________________________________________
consensus             CCGAGGCAGCTTTCTCCCGGTCACCCGGCGGCTGAAGAAGCCACCCTTGCCCCCATCGGA
 
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JMFN028D07+           GCCCCCGGCGGCAAGGGGGGTTTCAGCCTTTCAGGCA                       
JMFN004M17+           GCCCCCGGCGGCAAGGGGGGTTTCAGCCTTTCAGGCAATATAATGAGCTTAGAGGG    
JMFN010F16+           GCCCCCGGCGGCAAGGGGGGTTTCAGCCTTTCAGGCAATATAATGAGCTTAGAGGG    
JMFN040K12+           GCCCCCGGCGGCAAGGGGGGTTTCAGCCTTTCAGGCAATATAATGAGCTTAGAGGGGAGG
                      ____________________________________________________________
consensus             GCCCCCGGCGGCAAGGGGGGTTTCAGCCTTTCAGGCAATATAATGAGCTTAGAGGGGAGG