Contig 013056:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN028F16Sequence561013056 (5)ref|XP_010271616.1|2e-85PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera]
JMFN039I24Sequence586013056 (5)ref|XP_007039159.1|1e-84Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi
JMSF004M08Sequence241004942 (2)499013056 (5)ref|XP_007039159.1|2e-76Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi
JMSF034H02Sequence675013056 (5)ref|XP_007039159.1|1e-84Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi635013056 (5)ref|XP_010271616.1|8e-82PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF034H02+ GA
                      ____________________________________________________________
consensus GA
 
. : . : . : . : . : . :
JMSF034H02+ ACATCACAGAAATATCTATTATAATAGCGCAAACTTAACAGCTCTACCCAACATGAACAA
rJMSF034H02- AGCTCTACCCAACATGAANAA
                      ____________________________________________________________
consensus ACATCACAGAAATATCTATTATAATAGCGCAAACTTAACAGCTCTACCCAACATGAACAA
 
. : . : . : . : . : . :
rJMSF004M08- AGT
JMSF034H02+ AACAGGTAAAGTTCAACATAATGCCAAAATATTTTTAAGATGATTCAAAAATTGACAAGT
rJMSF034H02- AACAGGTAAAGTTCNACATAATGCCAAAATATTTTTAAGATGATTCAAAAATTGACAAGT
JMFN028F16+ AAGATGATTCAAAAATTGACAAGT
                      ____________________________________________________________
consensus AACAGGTAAAGTTCAACATAATGCCAAAATATTTTTAAGATGATTCAAAAATTGACAAGT
 
. : . : . : . : . : . :
rJMSF004M08- ACCANTACCCATATCAATAGTTTTGGACAA-CTCANACAGTCAAACAATAAAGCAGAATA
JMSF034H02+ ACCAATACCCATATCAATAGTTTTGGACAA-CTCATACAGTCAAACAATAAAGCAGAATA
rJMSF034H02- ACCAATACCCATATCAATAGTTTTGGACAANCTCATANNGTCNNACAATAAAGCAGAATA
JMFN028F16+ ACCAATACCCATATCAATAGTTTTGGACAA-CTCATACAGTCAAACAATAAAGCAGAATA
                      ____________________________________________________________
consensus ACCAATACCCATATCAATAGTTTTGGACAA-CTCATACAGTCAAACAATAAAGCAGAATA
 
. : . : . : . : . : . :
rJMSF004M08- ATAATAATTAATTCCCTTGGNCTTGATATTTCTAANAACCATACNCTACANGACTGGCAA
JMSF034H02+ ATAATAATTAATTCCCTTGGTCTTGATATTTCTAAAAACCATACACTACAAGACTGGCAA
rJMSF034H02- ATAATAATTAATTCCCTTGGTCTTGATATTTCTAAAAACCATACACTACAAGACTGGCAA
JMFN028F16+ ATAATAATTAATTCCCTTGGTCTTGATATTTCTAAAAACCATACACTACAAGACTGGCAA
                      ____________________________________________________________
consensus ATAATAATTAATTCCCTTGGTCTTGATATTTCTAAAAACCATACACTACAAGACTGGCAA
 
. : . : . : . : . : . :
rJMSF004M08- ATCTTCAGANACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
JMSF034H02+ ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
rJMSF034H02- ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
JMFN028F16+ ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
JMFN039I24+ ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
                      ____________________________________________________________
consensus ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
 
. : . : . : . : . : . :
rJMSF004M08- CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCANACGTGCATAGCACTTGCGGCAG
JMSF034H02+ CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGCAG
rJMSF034H02- CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGNAG
JMFN028F16+ CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGCAG
JMFN039I24+ CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGCAG
                      ____________________________________________________________
consensus CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGCAG
 
. : . : . : . : . : . :
rJMSF004M08- ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
JMSF034H02+ ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
rJMSF034H02- ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
JMFN028F16+ ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
JMFN039I24+ ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
                      ____________________________________________________________
consensus ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
 
. : . : . : . : . : . :
rJMSF004M08- CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
JMSF034H02+ CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
rJMSF034H02- CCACGAAGCCTCNGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
JMFN028F16+ CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
JMFN039I24+ CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
                      ____________________________________________________________
consensus CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
 
. : . : . : . : . : . :
rJMSF004M08- GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
JMSF034H02+ GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
rJMSF034H02- GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
JMFN028F16+ GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
JMFN039I24+ GTACGGCCATCTTCCAGCTGCTTACCAACAAAAATCAACCTCTGTTGATCCGGTGGAATT
                      ____________________________________________________________
consensus GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
 
. : . : . : . : . : . :
rJMSF004M08- CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
JMSF034H02+ CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
rJMSF034H02- CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGANTCGACCTCA
JMFN028F16+ CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
JMFN039I24+ CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
                      ____________________________________________________________
consensus CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
 
. : . : . : . : . : . :
rJMSF004M08- AGTGTGATGGTCTTGCC
JMSF034H02+ AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCT
rJMSF034H02- AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCT
JMFN028F16+ AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCTGATATCA
JMFN039I24+ AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCTGATATCACA
                      ____________________________________________________________
consensus AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCTGATATCACA