clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN028F16 | Sequence | 561 | 013056 (5) | ref|XP_010271616.1| | 2e-85 | PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera] | |||||
JMFN039I24 | Sequence | 586 | 013056 (5) | ref|XP_007039159.1| | 1e-84 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||||
JMSF004M08 | Sequence | 241 | 004942 (2) | 499 | 013056 (5) | ref|XP_007039159.1| | 2e-76 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||
JMSF034H02 | Sequence | 675 | 013056 (5) | ref|XP_007039159.1| | 1e-84 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | 635 | 013056 (5) | ref|XP_010271616.1| | 8e-82 | PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
JMSF034H02+ GA
____________________________________________________________
consensus GA
. : . : . : . : . : . :
JMSF034H02+ ACATCACAGAAATATCTATTATAATAGCGCAAACTTAACAGCTCTACCCAACATGAACAA
rJMSF034H02- AGCTCTACCCAACATGAANAA
____________________________________________________________
consensus ACATCACAGAAATATCTATTATAATAGCGCAAACTTAACAGCTCTACCCAACATGAACAA
. : . : . : . : . : . :
rJMSF004M08- AGT
JMSF034H02+ AACAGGTAAAGTTCAACATAATGCCAAAATATTTTTAAGATGATTCAAAAATTGACAAGT
rJMSF034H02- AACAGGTAAAGTTCNACATAATGCCAAAATATTTTTAAGATGATTCAAAAATTGACAAGT
JMFN028F16+ AAGATGATTCAAAAATTGACAAGT
____________________________________________________________
consensus AACAGGTAAAGTTCAACATAATGCCAAAATATTTTTAAGATGATTCAAAAATTGACAAGT
. : . : . : . : . : . :
rJMSF004M08- ACCANTACCCATATCAATAGTTTTGGACAA-CTCANACAGTCAAACAATAAAGCAGAATA
JMSF034H02+ ACCAATACCCATATCAATAGTTTTGGACAA-CTCATACAGTCAAACAATAAAGCAGAATA
rJMSF034H02- ACCAATACCCATATCAATAGTTTTGGACAANCTCATANNGTCNNACAATAAAGCAGAATA
JMFN028F16+ ACCAATACCCATATCAATAGTTTTGGACAA-CTCATACAGTCAAACAATAAAGCAGAATA
____________________________________________________________
consensus ACCAATACCCATATCAATAGTTTTGGACAA-CTCATACAGTCAAACAATAAAGCAGAATA
. : . : . : . : . : . :
rJMSF004M08- ATAATAATTAATTCCCTTGGNCTTGATATTTCTAANAACCATACNCTACANGACTGGCAA
JMSF034H02+ ATAATAATTAATTCCCTTGGTCTTGATATTTCTAAAAACCATACACTACAAGACTGGCAA
rJMSF034H02- ATAATAATTAATTCCCTTGGTCTTGATATTTCTAAAAACCATACACTACAAGACTGGCAA
JMFN028F16+ ATAATAATTAATTCCCTTGGTCTTGATATTTCTAAAAACCATACACTACAAGACTGGCAA
____________________________________________________________
consensus ATAATAATTAATTCCCTTGGTCTTGATATTTCTAAAAACCATACACTACAAGACTGGCAA
. : . : . : . : . : . :
rJMSF004M08- ATCTTCAGANACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
JMSF034H02+ ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
rJMSF034H02- ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
JMFN028F16+ ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
JMFN039I24+ ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
____________________________________________________________
consensus ATCTTCAGACACAAAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCA
. : . : . : . : . : . :
rJMSF004M08- CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCANACGTGCATAGCACTTGCGGCAG
JMSF034H02+ CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGCAG
rJMSF034H02- CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGNAG
JMFN028F16+ CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGCAG
JMFN039I24+ CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGCAG
____________________________________________________________
consensus CATTTCTTTTTGCGGCAGTTGACAGCGCGAGGATGCAAACGTGCATAGCACTTGCGGCAG
. : . : . : . : . : . :
rJMSF004M08- ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
JMSF034H02+ ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
rJMSF034H02- ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
JMFN028F16+ ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
JMFN039I24+ ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
____________________________________________________________
consensus ATCATCTTATCTTGGTTATACTTCCTAGCCAAGGCCATCAAAGACGGCTCAATAATTCCT
. : . : . : . : . : . :
rJMSF004M08- CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
JMSF034H02+ CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
rJMSF034H02- CCACGAAGCCTCNGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
JMFN028F16+ CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
JMFN039I24+ CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
____________________________________________________________
consensus CCACGAAGCCTCAGCACCAGATGCAGAGTAGACTCTTTCTGAATATTGTAGTCAGCAAGG
. : . : . : . : . : . :
rJMSF004M08- GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
JMSF034H02+ GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
rJMSF034H02- GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
JMFN028F16+ GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
JMFN039I24+ GTACGGCCATCTTCCAGCTGCTTACCAACAAAAATCAACCTCTGTTGATCCGGTGGAATT
____________________________________________________________
consensus GTACGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCCGGTGGAATT
. : . : . : . : . : . :
rJMSF004M08- CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
JMSF034H02+ CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
rJMSF034H02- CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGANTCGACCTCA
JMFN028F16+ CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
JMFN039I24+ CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
____________________________________________________________
consensus CCTTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATAGTGTCGCTAGACTCGACCTCA
. : . : . : . : . : . :
rJMSF004M08- AGTGTGATGGTCTTGCC
JMSF034H02+ AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCT
rJMSF034H02- AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCT
JMFN028F16+ AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCTGATATCA
JMFN039I24+ AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCTGATATCACA
____________________________________________________________
consensus AGTGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCATTTTCTCTGATATCACA