clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031J09 | Sequence | 586 | 016303 | ref|XP_009757388.1| | 3e-36 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP | 564 | 013046 (9) | ref|XP_009757388.1| | 3e-36 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP |
JMFN007H12 | Sequence | 550 | 013046 (9) | ref|XP_009757388.1| | 2e-36 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP | |||||
JMFN033B24 | Sequence | 591 | 013046 (9) | ref|XP_009757388.1| | 3e-23 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP | |||||
JMFN034N10 | Sequence | 482 | 013046 (9) | ref|XP_009757388.1| | 1e-36 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP | |||||
JMFS039C01 | Sequence | 509 | 013046 (9) | ref|XP_009757388.1| | 2e-36 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP | |||||
JMSF010O07 | Sequence | 206 | 013046 (9) | ref|XP_009757388.1| | 9e-11 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP | 454 | 013046 (9) | ref|XP_009757388.1| | 8e-37 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP |
JMSF013N16 | Sequence | 432 | 013046 (9) | ref|XP_009757388.1| | 6e-37 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP | 486 | 013046 (9) | ref|XP_009757388.1| | 1e-36 | PREDICTED: cytochrome b-c1 complex subunit 6-like [Nicotiana sylvestris] ref|XP |
This contig is upended
. : . : . : . : . : . :
rJMSF013N16- ATTTGAATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
JMFN007H12+ GATCACATAACAATTTGAATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
JMFS039C01+ CAAGCCCAATG
JMFN034N10+ AGAAAATAGTATAGTAAGATTCAAGCCCAATG
rJMFF031J09- AATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
JMFN033B24+ AATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
____________________________________________________________
consensus GATCACATAACAATTTGAATAGAAAATAGTATAGTAAGATTCAAGCCCAATG
. : . : . : . : . : . :
rJMSF013N16- TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMFN007H12+ TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMFS039C01+ TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMFN034N10+ TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
rJMSF010O07- AGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMSF013N16+ AAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
rJMFF031J09- TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
JMFN033B24+ TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
____________________________________________________________
consensus TAAAATTTCTTATTAAATCAGATTCAAGACCCTTGAAGTTCAAGAGTTTCAATGCAGTTA
. : . : . : . : . : . :
rJMSF013N16- ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMFN007H12+ ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMFS039C01+ ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMFN034N10+ ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
rJMSF010O07- ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMSF013N16+ ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
rJMFF031J09- ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
JMFN033B24+ ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
____________________________________________________________
consensus ATAAGCCTGCCTGGAAGCATTGCTAGCTTCTAACAAAAAGATGATGAATGCAGAAAAGCC
. : . : . : . : . : . :
rJMSF013N16- TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMFN007H12+ TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMFS039C01+ TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMFN034N10+ TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
rJMSF010O07- TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMSF013N16+ TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
rJMFF031J09- TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
JMFN033B24+ TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
____________________________________________________________
consensus TTGCTCAGCAACAGATTAGCAAACATGCGATGTATCCTTGCTACTTGAGTTTCGCAAAAA
. : . : . : . : . : . :
rJMSF013N16- GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMFN007H12+ GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMFS039C01+ GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMFN034N10+ GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
rJMSF010O07- GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMSF013N16+ GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
rJMFF031J09- GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
JMFN033B24+ GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
____________________________________________________________
consensus GCTTTAGGGCAACGCATTTGTCAATGCAGTGCCAATAATCAAAATATTGTCCAGTGCAAT
. : . : . : . : . : . :
rJMSF013N16- GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMFN007H12+ GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMFS039C01+ GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMFN034N10+ GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
rJMSF010O07- GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMSF013N16+ GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMSF010O07+ TAGCACATGCCTGATATTCCCGGAGCT
rJMFF031J09- GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
JMFN033B24+ G-TTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
____________________________________________________________
consensus GTTTGTGCCCACTTTCATCACCTTCAATCCGTTTAGCACATGCCTGATATTCCCGGAGCT
. : . : . : . : . : . :
rJMSF013N16- GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMFN007H12+ GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMFS039C01+ GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMFN034N10+ GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
rJMSF010O07- GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMSF013N16+ GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMSF010O07+ GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
rJMFF031J09- GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
JMFN033B24+ GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
____________________________________________________________
consensus GCCTTATGCATTTTGGCTTACAAGTATCTTCAAGTAGCTTCTTCTGATCTACAACTTCCT
. : . : . : . : . : . :
rJMSF013N16- CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMFN007H12+ CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMFS039C01+ CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMFN034N10+ CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
rJMSF010O07- CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMSF013N16+ CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMSF010O07+ CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
rJMFF031J09- CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
JMFN033B24+ CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
____________________________________________________________
consensus CGTCCGACATGTCTAATGAAGATGAGACGCGAAGAGCTTGATGCAGCTGATTTCACCTGC
. : . : . : . : . : . :
rJMSF013N16- GTCGATCGGGTGGTGTGTTTGAGGC
JMFN007H12+ GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
JMFS039C01+ GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
JMFN034N10+ GTCGATCGGGTGGTGTGTTTGAGGCGGCGA
rJMSF010O07- GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTC
JMSF013N16+ GTCGATCGGGTGGTGTGTTTGAGGC
JMSF010O07+ GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTC
rJMFF031J09- GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
JMFN033B24+ GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
____________________________________________________________
consensus GTCGATCGGGTGGTGTGTTTGAGGCGGCGATATGGGATGAAGTATGAAGGGGAAAGTCAA
. : . : . : . : . : . :
JMFN007H12+ TGGTGCGTGCCGTTCCCG
JMFS039C01+ TGGTGCGTGCCGTTCCCG
rJMFF031J09- TGGTGCGTGCCGTTCCCGTCCTATTACC
JMFN033B24+ TGGTGCGTGCCGTTCCCGTCCTATTACCACTGCCCAGGCGCGTTCGTTGCGTTTGTGGAA
____________________________________________________________
consensus TGGTGCGTGCCGTTCCCGTCCTATTACCACTGCCCAGGCGCGTTCGTTGCGTTTGTGGAA