clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF017L23 | Sequence | 537 | 005298 (5) | ref|XP_009631006.1| | 2e-52 | PREDICTED: uncharacterized protein LOC104120853 isoform X1 [Nicotiana tomentosi | 716 | 013010 (4) | ref|XP_009797985.1| | 3e-51 | PREDICTED: uncharacterized protein LOC104244291 isoform X2 [Nicotiana sylvestri |
JMFF035C16 | Sequence | 492 | 005298 (5) | ref|XP_009631006.1| | 3e-61 | PREDICTED: uncharacterized protein LOC104120853 isoform X1 [Nicotiana tomentosi | 785 | 013010 (4) | ref|XP_009797985.1| | 1e-57 | PREDICTED: uncharacterized protein LOC104244291 isoform X2 [Nicotiana sylvestri |
JMFN005F08 | Sequence | 444 | 013010 (4) | ref|XP_009797985.1| | 1e-16 | PREDICTED: uncharacterized protein LOC104244291 isoform X2 [Nicotiana sylvestri | |||||
JMSF040E17 | Sequence | 679 | 005298 (5) | ref|XP_009797984.1| | 3e-65 | PREDICTED: uncharacterized protein LOC104244291 isoform X1 [Nicotiana sylvestri | 678 | 013010 (4) | ref|XP_009797984.1| | 1e-32 | PREDICTED: uncharacterized protein LOC104244291 isoform X1 [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
rJMFF035C16+ CGTCATGCTTTGNTTTATGA
____________________________________________________________
consensus CGTCATGCTTTGNTTTATGA
. : . : . : . : . : . :
rJMFF017L23+ CATGGGAATGGGTTGATCTTAAAGAGATTCCACCTGATGA
rJMFF035C16+ TGNTAATGCTCCGAATGAAACATGGGAATGGGTTGATCTTAAAGAGATTCCACCTGATGA
____________________________________________________________
consensus TGNTAATGCTCCGAATGAAACATGGGAATGGGTTGATCTTAAAGAGATTCCACCTGATGA
. : . : . : . : . : . :
rJMFF017L23+ TATCCGATGGATAGGTGATGATCCTGTTATATCTCGAGGAGGTGGATGTGGTGGTGGAGG
rJMFF035C16+ TATCCGATGGATAGGTGATGATCCTGTTATATCTCGAGGAGGTGGATGTGGTGGTGGAGG
____________________________________________________________
consensus TATCCGATGGATAGGTGATGATCCTGTTATATCTCGAGGAGGTGGATGTGGTGGTGGAGG
. : . : . : . : . : . :
rJMSF040E17+ GGTGGAGGTAGTGTTCAAGGCTCTGCATTTAGCATTCAAAGAGGTGGAAG
rJMFF017L23+ CGGAGGCGGAGGTGGAGGTAGTGTTCAAGGCTCTGCATTTAGCATTCAAAGAGGTGGAAG
rJMFF035C16+ CGGAGGCGGAGGTGGAGGTAGTGTTCAAGGCTCTGCATTTAGCATTCAAAGAGGTGGAAG
____________________________________________________________
consensus CGGAGGCGGAGGTGGAGGTAGTGTTCAAGGCTCTGCATTTAGCATTCAAAGAGGTGGAAG
. : . : . : . : . : . :
rJMSF040E17+ TTTCTCAAGAGACCAATGTCGGAAGGAAGTTCGGCCGGTGCAGAATGGGGTCATGAAGAA
rJMFF017L23+ TTTCTCAAGAGACCAATATCGGAAGGAAGTTCGGCCGGTGCAGAATGGGGTCATGAAGAA
rJMFF035C16+ TTTCTCAAGAGACCAATGTCGGAAGGAAGTTCGGCCGGTGCAGAATGGGGTCATGAAGAA
____________________________________________________________
consensus TTTCTCAAGAGACCAATGTCGGAAGGAAGTTCGGCCGGTGCAGAATGGGGTCATGAAGAA
. : . : . : . : . : . :
rJMSF040E17+ GGCAGCTAGTGATGAAATTGAAATACTGCACACAGAAACTTTGATAAAAAAGGTAGAGAA
rJMFF017L23+ GGCAGCTAGTGATGAAATTGAAATACTGCACACAGAAACTTTGATAAAAAAGGTAGAGAA
rJMFF035C16+ GGCAGCTAGTGATGAAATTGAAATACTGCACACAGAAACTTTGATAAAAAAGGTAGAGAA
____________________________________________________________
consensus GGCAGCTAGTGATGAAATTGAAATACTGCACACAGAAACTTTGATAAAAAAGGTAGAGAA
. : . : . : . : . : . :
rJMSF040E17+ AGTGATTGATGCTAGTCCTCCTAATTTGATTGAGATTCAAAAGGCCAAGAAGATGCTAAA
rJMFF017L23+ AGTGATTGATGCTAGTCCTCCTAATTTGATTGAGATTCAAAAGGCCAAGAAGATGCTAAA
rJMFF035C16+ AGTGATTGATGCTAGTCCTCCTAATTTGATTGAGATTCAAAAGGCCAAGAAGATGCTAAA
JMFN005F08+ TCAAAAGGCCAAGAAGATGCTAAA
____________________________________________________________
consensus AGTGATTGATGCTAGTCCTCCTAATTTGATTGAGATTCAAAAGGCCAAGAAGATGCTAAA
. : . : . : . : . : . :
rJMSF040E17+ GGATCATGAAAAATCATTAATGGATGTGATTGCAAAGTTAGCAGATGCGTGTGATCGAGG
rJMFF017L23+ GGATCATGAAAAATCATTAATGGATGTGATTGCAAAGTTAGCAGATGCGTGTGATCGAGG
rJMFF035C16+ GGATCATGAAAAATCATTAATGGATGTGATTGCAAAGTTAGCAGATGCGTGTGATCGAGG
JMFN005F08+ GGATCATGAAAAATCATTAATGGATGTGATTGCAAAGTTAGCAGATGCGTGTGATCGAGG
____________________________________________________________
consensus GGATCATGAAAAATCATTAATGGATGTGATTGCAAAGTTAGCAGATGCGTGTGATCGAGG
. : . : . : . : . : . :
rJMSF040E17+ AAATGATGGACAACAGATCCTGCACA-AAATTCACAATACAATCACTTAAGGGTGGACAT
rJMFF017L23+ AAATGATGGACAACAGATCCTGCACAGAAATTCACAATACAATCACTTAAGGGTGGACAT
rJMFF035C16+ AAATGATGGACAACAGATCCTGCACAGAAATTCACAATACAATCACTTAAGGGTGGACAT
JMFN005F08+ AAATGATGGACAACAGATCCTGCACAGAAATTCACAATACAATCACTTAAGGGTGGACAT
____________________________________________________________
consensus AAATGATGGACAACAGATCCTGCACAGAAATTCACAATACAATCACTTAAGGGTGGACAT
. : . : . : . : . : . :
rJMSF040E17+ AGATCCCGAGACTCGAGGACGTGGCAGCAGTCAAGAAATGGCAAGGGTTCAAGGGATATC
rJMFF017L23+ AGATCCCGAGACTCGAGGACGTGGCAGCAGTCAAGAAATGGCAAGGGTTCAAGGGATATC
rJMFF035C16+ AGATCCCGAGACTCGAGGACGTGGCAGCAGTCAAGAAATGGCAAGGGTTCAAGGGATATC
JMFN005F08+ AGATCCCGAGACTCGAGGACGTGGCAGCAGTCAAGAAATGGCAAGGGTTCAAGGGATATC
____________________________________________________________
consensus AGATCCCGAGACTCGAGGACGTGGCAGCAGTCAAGAAATGGCAAGGGTTCAAGGGATATC
. : . : . : . : . : . :
rJMSF040E17+ CGATCAGCAGGACGAGGAGATTGTTGTTATCTAGGGTTTCCTTCTCTTGATCAGTCATAT
rJMFF017L23+ CGATCAGCAGGACGAGGAGATTGTTGTTATCTAGGGTTTCCTTCTCTTGATCAGTCATAT
rJMFF035C16+ CGATCAGCAGGACGAGGAGATTGTTGTTATNTAGGGTTTCCTTCTCTTGATCAGTCATAT
JMFN005F08+ CGATCAGCAGGACGAGGAGATTGTTGTTATCTAGGGTTTCCTTCTCTTGATCAGTCATAT
____________________________________________________________
consensus CGATCAGCAGGACGAGGAGATTGTTGTTATCTAGGGTTTCCTTCTCTTGATCAGTCATAT
. : . : . : . : . : . :
rJMSF040E17+ TTAAAAATGCATTTAGGAAATCAGTATTTGGTAGGCCCCTTTATTAGCTTTCATTTGTTT
rJMFF017L23+ TTAAAAATGCATTTAGGAAATCAGTATTTGGTAGGCCCCTTTATTAGCTTTCATTTGTTT
rJMFF035C16+ TTAAAAATGCATTTAGGAAATCAGTATTTGGTAGGCCCCTTTATTAGCTTTCATTTGTTT
JMFN005F08+ TTAAAAATGCATTTAGGAAATCAGTATTTGGTAGGCCCCTTTATTAGCTTTCATTTGTTT
____________________________________________________________
consensus TTAAAAATGCATTTAGGAAATCAGTATTTGGTAGGCCCCTTTATTAGCTTTCATTTGTTT
. : . : . : . : . : . :
rJMSF040E17+ AACATAGTGATGGCTGTATGCATGCTAGCCAGCAAGCTACCTTTGTGGAAATATGTATTT
rJMFF017L23+ AACATAGTGATGGCTGTATGCATGCTAGCCAGCAAGCTACCTTTGTGGAAATATGTATTT
rJMFF035C16+ AACATAGTGATGGCTGTATGCATGCTAGCCAGCAAGCTACCTTTGTGGAAATATGTATTT
JMFN005F08+ AACATAGTGATGGCTGTATGCATGCTAGCCAGCAAGCTACCTTTGTGGAAATATGTATTT
____________________________________________________________
consensus AACATAGTGATGGCTGTATGCATGCTAGCCAGCAAGCTACCTTTGTGGAAATATGTATTT
. : . : . : . : . : . :
rJMSF040E17+ CC
rJMFF017L23+ CCAGTGT
rJMFF035C16+ CCAGTGTTGGAGACAATGTAAAAACATTTTCTTTGTATATCAATT
JMFN005F08+ CCAGTGTTGGAGACAATGTAAAAACATTTTCTTTGTATATCAATTTCATGTATTGCAACC
____________________________________________________________
consensus CCAGTGTTGGAGACAATGTAAAAACATTTTCTTTGTATATCAATTTCATGTATTGCAACC