| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010P17 | Sequence | 543 | 012986 (7) | ref|XP_006347037.1| | 1e-52 | PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Solanum tuberosum] | 812 | 012986 (7) | ref|XP_009595225.1| | 5e-74 | PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Nicotiana tomentosifo |
| JMFF047L09 | Sequence | 644 | 012986 (7) | ref|XP_006347037.1| | 4e-70 | PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Solanum tuberosum] | 587 | 012986 (7) | ref|XP_009773318.1| | 7e-43 | PREDICTED: 50S ribosomal protein L21, mitochondrial-like isoform X1 [Nicotiana |
| JMSF005D10 | Sequence | 251 | 012986 (7) | ref|XP_004232878.1| | 5e-06 | PREDICTED: 50S ribosomal protein L21, mitochondrial [Solanum lycopersicum] | 450 | 012512 (4) | ref|XP_011020504.1| | 1e-26 | PREDICTED: dnaJ homolog subfamily C member 2-like [Populus euphratica] ref|XP_01 |
| JMSF049L02 | Sequence | 701 | 012986 (7) | ref|XP_006347037.1| | 1e-76 | PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Solanum tuberosum] | 794 | 012986 (7) | ref|XP_009595225.1| | 4e-74 | PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Nicotiana tomentosifo |
This contig is upended
. : . : . : . : . : . :
rJMFF047L09- AGGAAAAAACTCAATTTTTATTCTTTTAAGTGTTTCAAGA
rJMFF010P17- ATTCGATTCAAATAGGAAAAAACTCAATTTTTATTCTTTTAAGTGTTTCAAGA
rJMSF049L02- AGA
____________________________________________________________
consensus ATTCGATTCAAATAGGAAAAAACTCAATTTTTATTCTTTTAAGTGTTTCAAGA
. : . : . : . : . : . :
rJMFF047L09- GTATAGCTAAGCTATGTTGCAAGAGAATCATGGTTATCACAAACTAAAAATACAAATCCT
rJMFF010P17- GTATAGCTAAGCTATGTTGCAAGAGAATCATGGTTATCACAAACTAAAAATACAAATCCT
rJMSF049L02- GTATAGCTAAGCTATGTTGCAAGAGAATCATGGTTATCACAAACTAAAAATACAAATCCT
____________________________________________________________
consensus GTATAGCTAAGCTATGTTGCAAGAGAATCATGGTTATCACAAACTAAAAATACAAATCCT
. : . : . : . : . : . :
rJMFF047L09- CATGACTGAACATGGCTTCTTCATTCAGAACTTTTGCCTCGAATGGAATTCTGAAATGCG
rJMFF010P17- CATGACTGAACATGGCTTCTTCATTCAGAACTTTTGCCTCGAATGGAATTCTGAAATGCG
rJMSF049L02- CATGACTGAACATGGCTTCTTCATTCAGAACTTTTGCCTCGAATGGAATTCTGAAATGCG
____________________________________________________________
consensus CATGACTGAACATGGCTTCTTCATTCAGAACTTTTGCCTCGAATGGAATTCTGAAATGCG
. : . : . : . : . : . :
rJMFF047L09- AGATCTGGCAAGCAGAAGAAGAGCAAATTTTGCGAAAAGACTTGATGGGAAATGTCTGCT
rJMFF010P17- AGATCTGGCAAGCAGAAGAAGAGCAAATTTTGCGAAAAGACTTGATGGGAAATGTCTGCT
rJMSF049L02- AGATCTGGCAAGCAGAAGAAGAGCAAATTTTGCGAAAAGACTTGATGGGAAATGTCTGCT
____________________________________________________________
consensus AGATCTGGCAAGCAGAAGAAGAGCAAATTTTGCGAAAAGACTTGATGGGAAATGTCTGCT
. : . : . : . : . : . :
rJMFF047L09- AAATCCCCCATTCTAAGCAGCAACTGCAACCTTTTCAGCAGGTTTAGCACCACTCTTTCC
rJMFF010P17- AAATCCCCCATTCTAAGCAGCAACTGCAACCTTTTCAGCAGGTTTAGCACCACTCTTTCC
rJMSF049L02- AAATCCCCCATTCTAAGCAGCAACTGCAACCTTTTCAGCAGGTTTAGCACCACTCTTTCC
____________________________________________________________
consensus AAATCCCCCATTCTAAGCAGCAACTGCAACCTTTTCAGCAGGTTTAGCACCACTCTTTCC
. : . : . : . : . : . :
rJMFF047L09- GGTTTTTAGAGATGGCATCACTTCCGGTTTCTCGATTCCTTGTATATCCGTTATCCTCAA
rJMFF010P17- GGTTTTTAGAGATGGCATCACTTCCGGTTTCTCGATTCCTTGTATATCCGTTATCCTCAA
rJMSF049L02- GGTTTTTAGAGATGGCATCACTTCCGGTTTCTCGATTCCTTGTATATCCGTTATCCTCAA
JMSF049L02+ CCTCAA
____________________________________________________________
consensus GGTTTTTAGAGATGGCATCACTTCCGGTTTCTCGATTCCTTGTATATCCGTTATCCTCAA
. : . : . : . : . : . :
rJMFF047L09- CTTTGTTAATTCCTGTCGATGCCCTCGTGTTCGTCGATAATTCTTCCGCCTTTTTTTCTT
rJMFF010P17- CTTTGTTAATTCCTGTCGATGCCCTCGTGTTCGTCGATAATTCTTCCGCCTTTTTTTCTT
rJMSF049L02- CTTTGTTAATTCCTGTCGATGCCCTCGTGTTCGTCGATAATTCTTCCGCCTTTTTTTCTT
JMSF049L02+ CTTTGTTAATTCCNGTCGATGCCCTCGTGTTCGTCGATAATTCTTCCGCCTTTTTTTCTT
____________________________________________________________
consensus CTTTGTTAATTCCTGTCGATGCCCTCGTGTTCGTCGATAATTCTTCCGCCTTTTTTTCTT
. : . : . : . : . : . :
rJMFF047L09- AAATATGAGCACTTTTGCATCCAATGCATGCTCCTCCACAACAGCATGAACAGATACATC
rJMFF010P17- AAATATGAGCACTTTTGCATCCAATGCATGCTCCTCCACAACAGCATGAACAGATACATC
rJMSF049L02- AAATATGAGCACTTTTGCATCCAATGCATGCTCCTCCACAACAGCATGAACAGATACATC
JMSF049L02+ AAATATGAGCACTTTTGCATCCAATGCATGCTCCTCCACAACAGCATGAACAGATACATC
JMFF047L09+ GCATCCAATGCATGCTCCTCCACANCAGCATGAACAGATACATC
____________________________________________________________
consensus AAATATGAGCACTTTTGCATCCAATGCATGCTCCTCCACAACAGCATGAACAGATACATC
. : . : . : . : . : . :
rJMFF047L09- AGGTAATATAGGCCGGCCAATAATTGTCTGTGTCTGAGAGCCCAACATCATAACCTTGTT
rJMFF010P17- AGGTAATATAGGCCGGCCAATAATTGTCTGTGTCTGAGAGCCCAACATCATAACCTTGTT
rJMSF049L02- AGGTAATATAGGCCGGCCAATAATTGTCTGTGTCTGAGAGCCCAACATCATAACCTTGTT
JMFF010P17+ GTCTGAGAGCCCAACATCATAACCTTGTT
JMSF049L02+ AGGTAATATAGGCCGGCCAATAATTGTCTGTGTCTGAGAGCCCAACATCATAACCTTGTT
JMFF047L09+ AGGTAATATAGGCCGGCCAATAATGGTCTGTGTCTGAGAGCCCAACATCATAACCTTGTT
____________________________________________________________
consensus AGGTAATATAGGCCGGCCAATAATTGTCTGTGTCTGAGAGCCCAACATCATAACCTTGTT
. : . : . : . : . : . :
rJMFF047L09- CAGGATCAACTTATCATTGACATCACAATACTTCAATCTTTCCACAAAAATGCTATCCCC
rJMFF010P17- CAGGATCAACTTATCATTGACATCACAATACTTCAATCTTTCCACAAAAATGCTATCCCC
rJMSF049L02- CAGGATCAACTTATCATTGACATCACAATACTTCAATCTTTCCACAAAAATGCTATCCCC
JMFF010P17+ CAGGATCAACTTATCATTGACATCACAATACTTCAATCTTTCCACAAAAATGCTATCCCC
JMSF049L02+ CAGGATCAACTTATCATTGACATCACAATACTTCAATCTTTCCACAAAAATGCTATCCCC
JMFF047L09+ CAGGATCAACTTATCATTGACATCACAATACTTCAATCTTTCCACAAAAATGCTATCCCC
____________________________________________________________
consensus CAGGATCAACTTATCATTGACATCACAATACTTCAATCTTTCCACAAAAATGCTATCCCC
. : . : . : . : . : . :
rJMFF047L09- ATTGCTC
rJMFF010P17- ATTGCTCACTTTAAATTGGTGCGACCCAATCTCAACAACAGCAAAAACGGGTTCATAAGG
rJMSF049L02- ATTGCTCACTTTAAATTGGTGCGACCCAATCTCAACAACAGCAAAAACGGGTTCATAAGG
JMFF010P17+ ATTGCTCACTTTAAATTGGTGCGACCCAATCTCAACAACAGCAAAAACGGGTTCATAAGG
JMSF049L02+ ATTGCTCACTTTAAATTGGTGCGACCCAATCTCAACAACAGCAAAAACGGGTTCATAAGG
JMFF047L09+ ATTGCTCACTTTAAATTGGTGCGACCCAATCTCAACAACAGCAAAAACGGGTTCATAAGG
____________________________________________________________
consensus ATTGCTCACTTTAAATTGGTGCGACCCAATCTCAACAACAGCAAAAACGGGTTCATAAGG
. : . : . : . : . : . :
rJMFF010P17- TTTGAACACCCGATCCGATCTCTCAAGTGGCCCGATCACCTTGTATCCAATCTCAGCTGC
rJMSF049L02- TTTGAACACCCGATCCGATCTCTCAAGTGGCCCGATCACCTTGTATCCAATCTCAGCTGC
JMFF010P17+ TTTGAACACCCGATCCGATCTCTCAAGTGGCCCGATCACCTTGTATCCAATCTCAGCTGC
JMSF049L02+ TTTGAACACCCGATCCGATCTCTCAAGTGGCCCGATCACCTTGTATCCAATCTCAGCTGC
JMFF047L09+ TTTGAACACCCGATCCGATCTCTCAAGTGGCCCGATCACCTTGTATCCAATCTCAGCTGC
____________________________________________________________
consensus TTTGAACACCCGATCCGATCTCTCAAGTGGCCCGATCACCTTGTATCCAATCTCAGCTGC
. : . : . : . : . : . :
rJMFF010P17- CTCTTTTATCTTATCCTCAGGACTCTTCGGCCCACTATTCGCTTCCTCCGCGTCCCCATC
rJMSF049L02- CTCTTTTATCTTATCCTCAGGACTCTTCGGCCCACTATTCGCTTCCTCCGCGTCCCCATC
JMFF010P17+ CTCTTTTATCTTATCCTCAGGACTCTTCGGCCCACTATTCGCTTCCTCCGCGTCCCCATC
JMSF049L02+ CTCTTTTATCTTATCCTCAGGACTCTTCGGCCCACTATTCGCTTCCTCCGCGTCCCCATC
JMFF047L09+ CTCTTTTATCTTATCCTCAGGACTCTTCGGCCCACTATTCGCTTCCTCCGCGTCCCCATC
____________________________________________________________
consensus CTCTTTTATCTTATCCTCAGGACTCTTCGGCCCACTATTCGCTTCCTCCGCGTCCCCATC
. : . : . : . : . : . :
rJMFF010P17- ACTAAAATCGGCAATTTCTTCTTCGCTCTCATCACCAGA
rJMSF049L02- ACTAAAATCGGCAATTTCTTCTTCGCTCTCATCACCAGATTCATCTTCACTCCCATCATT
JMFF010P17+ ACTAAAATCGGCAATTTCTTCTTCGCTCTCATCACCAGATTCATCTTCACTCCCATCATT
JMSF049L02+ ACTAAAATCGGCAATTTCTTCTTCGCTCTCATCACCAGATTCATCTTCACTCCCATCATT
JMSF005D10+ GCTCTCATCACCAGATTCATCTTCACTCCCATCATT
JMFF047L09+ ACTAAAATCGGCAATTTCTTCTTCGCTCTCATCACCAGATTCATCTTCACTCCCATCATT
____________________________________________________________
consensus ACTAAAATCGGCAATTTCTTCTTCGCTCTCATCACCAGATTCATCTTCACTCCCATCATT
. : . : . : . : . : . :
rJMSF049L02- GTGCTGGGAAC
JMFF010P17+ GTGCTTGGAACAGAAGTTCCGAGAGATAAACGGGTATTGGGTGTGTGATTTTGTTGAAAT
JMSF049L02+ GTGCTTGGAACAGAAGTTCCGAGAGATAAACGGGTATTGGGTGTGTGATTTTGTTGAAAT
JMSF005D10+ GTGCTTGGAACAGAAGTTCCGAGAGATAAACGGGTATTGGGTGTGTGATTTTGTTGAAAT
JMFF047L09+ GTGCTTGGAACAGAAGTTCCGAGAGATAAACGGGTATTGGGTGTGTGATTTTGTTGAAAT
____________________________________________________________
consensus GTGCTTGGAACAGAAGTTCCGAGAGATAAACGGGTATTGGGTGTGTGATTTTGTTGAAAT
. : . : . : . : . : . :
JMFF010P17+ GTGGAGACAATCTTGGGAAAAGGTTAGATTTCTGAGGGAATCGAAGAACGCCGGGTTTAG
JMSF049L02+ GTGGAGACAATCTTGGGAAAAGGTTAGATTTCTGAGGGAATCGAAGAACGCCGGGTTTAG
JMSF005D10+ GTGGAGACAATCTTGGGAAAAGGTTAGATTTCTGAGGGAATCGAAGAACGCCGGGTTTAG
JMFF047L09+ GTGGAGACAATCTTGGGAAAAGGTTAGATTTCTGAGGGAATCGAAGAACGCCGGGTTTAG
____________________________________________________________
consensus GTGGAGACAATCTTGGGAAAAGGTTAGATTTCTGAGGGAATCGAAGAACGCCGGGTTTAG
. : . : . : . : . : . :
JMFF010P17+ AGCTTTCAGGGTTTTCAGAGACGTATTTGGAGAGAGAAGAAATGAAGAGTAGTGCCGGGT
JMSF049L02+ AGCTTTCAGGGTTTTCAGAGACGTATTTGGAGAGAGAAGAAATGAAGAGTAGTGCCGGGT
JMSF005D10+ AGCTTTCAGGGTTTTCAGAGACGTATTTGGAGAGAGAAGAAATGAAGAGTAGTGCCGGGT
JMFF047L09+ AGCTTTCAGGGTTTTCAGAGACGTATTTGGAGAGAGAAGAAATGAAGAGTAGTGCCGGGT
____________________________________________________________
consensus AGCTTTCAGGGTTTTCAGAGACGTATTTGGAGAGAGAAGAAATGAAGAGTAGTGCCGGGT
. : . : . : . : . : . :
JMFF010P17+ TAGGATCCGGAGGCAACGTCGAGTAGCCAT
JMSF049L02+ TAGGATCCGGAGGCAACGTCGAGTAGCCAT
JMSF005D10+ TAGGATCCGGAGGCAACGTCGAGTAGCCAT
JMFF047L09+ TAGGATCCGGAGGCAACGTCGAGTAGCCATGTTGTCCAAGAGCCGAGCTTGAGTAAGCGT
____________________________________________________________
consensus TAGGATCCGGAGGCAACGTCGAGTAGCCATGTTGTCCAAGAGCCGAGCTTGAGTAAGCGT