clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF045O20 | Sequence | 600 | 012976 (4) | emb|CDP00111.1| | 6e-05 | unnamed protein product [Coffea canephora] | 620 | 011184 (3) | pdb|2JUH|A | 7e-44 | Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1 |
JMFS053C10 | Sequence | 489 | 012976 (4) | ref|NP_001233854.1| | 1e-15 | telomere binding protein [Solanum lycopersicum] dbj|BAF36749.1| telomere binding | |||||
JMSF038F24 | Sequence | 102 | 012976 (4) | 835 | 011184 (3) | ref|XP_009785792.1| | 2e-41 | PREDICTED: telomere repeat-binding protein 3-like isoform X1 [Nicotiana sylvest | |||
JMSF050E06 | Sequence | 675 | 012976 (4) | ref|XP_009783131.1| | 2e-33 | PREDICTED: telomere repeat-binding protein 4-like [Nicotiana sylvestris] | 728 | 011184 (3) | ref|XP_009785793.1| | 6e-53 | PREDICTED: telomere repeat-binding protein 3-like isoform X2 [Nicotiana sylvest |
This contig is upended
. : . : . : . : . : . :
JMSF050E06+ TCCTATGCTTTGCAAAAGAAGCGCTAGGAACCGGGTCCCTGTACAAGGGCAGC
____________________________________________________________
consensus TCCTATGCTTTGCAAAAGAAGCGCTAGGAACCGGGTCCCTGTACAAGGGCAGC
. : . : . : . : . : . :
JMSF050E06+ TGTACACTACAATCTGAGTTATTGAGGGTATTCTTATTAGTAGTAGTTAAAGAAATTTTT
____________________________________________________________
consensus TGTACACTACAATCTGAGTTATTGAGGGTATTCTTATTAGTAGTAGTTAAAGAAATTTTT
. : . : . : . : . : . :
JMSF050E06+ ATCGGATCCTTTACACTGCAACCGCCAGCCATAGTTATGTCTCCCGTCTGCATCCCGTCA
____________________________________________________________
consensus ATCGGATCCTTTACACTGCAACCGCCAGCCATAGTTATGTCTCCCGTCTGCATCCCGTCA
. : . : . : . : . : . :
JMSF050E06+ TCAGCTAACTGTTGTTTTTGAGTTGCGTTGTTAATGTTAACACTACGTAAATCCCCAAGG
____________________________________________________________
consensus TCAGCTAACTGTTGTTTTTGAGTTGCGTTGTTAATGTTAACACTACGTAAATCCCCAAGG
. : . : . : . : . : . :
JMSF050E06+ TTAGACGGTCTTCCTTCCACTTCGCTATTGAAATTCCCTTCAGCATCGAGATTCTTAACG
____________________________________________________________
consensus TTAGACGGTCTTCCTTCCACTTCGCTATTGAAATTCCCTTCAGCATCGAGATTCTTAACG
. : . : . : . : . : . :
JMSF050E06+ CTCTCCAACTTGACACCCGGATACACTTTTCCGGAGAACTCGGTAAAAGTGCTCTCTGAG
____________________________________________________________
consensus CTCTCCAACTTGACACCCGGATACACTTTTCCGGAGAACTCGGTAAAAGTGCTCTCTGAG
. : . : . : . : . : . :
JMSF050E06+ ACACAACTATTTTCCGAATATGACGATCCACCATTGCCATGCTTGATTTTCTGCTCTTGA
JMFS053C10+ TTTCCGAATATGACGATCCACCATTGCCATGCTTGATTTTCTGCTCTTGA
____________________________________________________________
consensus ACACAACTATTTTCCGAATATGACGATCCACCATTGCCATGCTTGATTTTCTGCTCTTGA
. : . : . : . : . : . :
JMSF050E06+ ATTGCGCCTTTGGGTAAAATTGCGCTTTCCACACAGCTTCCCCGATCAAGGCACTCCGGC
JMFS053C10+ ATTGCGCCCCTCCGTAAAATTGCGCTTTCCACACAGCTTCCCCGATCAAGGCACTCCGGC
____________________________________________________________
consensus ATTGCGCCTTTGGGTAAAATTGCGCTTTCCACACAGCTTCCCCGATCAAGGCACTCCGGC
. : . : . : . : . : . :
JMSF050E06+ TTCAAAGCTTTGCCTTCTTGAAAATTTCCCAGTTCTTCGGTTACATCTCTCTGAATTGCA
JMFS053C10+ TTCAAAGCTTTGCCTTCTTGAAAATTTCCCAGTTCTTCGGTTACATCTCTNTGAATTGCA
JMFF045O20+ TTCAAAGCTTTGCCTTCTTGAAAATTTCCCAGTTCTTCGGTTACATCTCTCTGAATTGCA
____________________________________________________________
consensus TTCAAAGCTTTGCCTTCTTGAAAATTTCCCAGTTCTTCGGTTACATCTCTCTGAATTGCA
. : . : . : . : . : . :
JMSF050E06+ GGTCCATCTTTTCCCTCGGCTGCATTACTAGAAGCCGAGCTTTCACTCTCCAGTAAAAGT
JMFS053C10+ GGTCCATCTTTTCCCTCGGCTGCATTACTAGAAGCCGAGCTTTCACTCTCCAGTAAAAGT
JMFF045O20+ GGTCCATCTTTTCCCTCGGCTGCATTACTAGAAGCCGAGCTTTCACTCTCCAGTAAAAGT
____________________________________________________________
consensus GGTCCATCTTTTCCCTCGGCTGCATTACTAGAAGCCGAGCTTTCACTCTCCAGTAAAAGT
. : . : . : . : . : . :
JMSF050E06+ TTCCCGGCTACAGCTGCCAACAACTCAAACGCACAAATTTGCTTATCATCCACATTTCCG
JMFS053C10+ TTCCCGGCTACAGCTGACAACAACTCAAACGCACAAATTTGCTTATCATCCACATTTCCG
JMFF045O20+ TTCCCGGCTACAGCTGCCAACAACTCAAACGCACAAATTTGCTTATCATCCACATTTCCG
____________________________________________________________
consensus TTCCCGGCTACAGCTGCCAACAACTCAAACGCACAAATTTGCTTATCATCCACATTTCCG
. : . : . : . : . : . :
JMSF050E06+ GTATGCCTCCTTCTAGACGATC
JMFS053C10+ GTATGCCTCCTTCTAGACGATCTAGGAGCCCGAGGCACAGCAGGAAACCGGTAGCCATCG
JMFF045O20+ GTATGCCTCCTTCTAGACGATCTAGGAGCCCGAGGCACAGCAGGAAACCGGTAGCCATCG
____________________________________________________________
consensus GTATGCCTCCTTCTAGACGATCTAGGAGCCCGAGGCACAGCAGGAAACCGGTAGCCATCG
. : . : . : . : . : . :
JMFS053C10+ AAACCATACTCCAGCCTCTTTTTCATCACCATATCTTAAGCACCATGCCACTATCAACAC
JMFF045O20+ AAACCATACTCCAGCCTCTTTTTCATCACCATATCTTAAGCACCATGCCACTATCAACAC
____________________________________________________________
consensus AAACCATACTCCAGCCTCTTTTTCATCACCATATCTTAAGCACCATGCCACTATCAACAC
. : . : . : . : . : . :
JMFS053C10+ AATCCACTGATATGAAGAAATCTATACTACTGTACAAATTGTTGGAACGCTGCGTACAAT
JMFF045O20+ AATCCACTGATATGAAGAAATCTATACTACTGTACAAATTGTTGGAACGCTGCGTACAAT
____________________________________________________________
consensus AATCCACTGATATGAAGAAATCTATACTACTGTACAAATTGTTGGAACGCTGCGTACAAT
. : . : . : . : . : . :
JMFS053C10+ CCAACCAACAAACACCCCC
JMFF045O20+ CCAACCAACAAACCCCCCCXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTCTTTTTTTTT
____________________________________________________________
consensus CCAACCAACAAACCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTTCTTTTTTTTT
. : . : . : . : . : . :
JMFF045O20+ TTACCCTTTTGTGAGAATGACGAAAAGAAGGCAAAGAAAAAGAATGGGTTACACTATTTC
____________________________________________________________
consensus TTACCCTTTTGTGAGAATGACGAAAAGAAGGCAAAGAAAAAGAATGGGTTACACTATTTC
. : . : . : . : . : . :
JMSF038F24+ TGAGGATAGGAACGAAAAACCTCTGGGTTTGGAAAAAGAAAAAC
JMFF045O20+ CTACGTGAAATGAAGTTGAGGATAGGAACGAAAAACCTCTGGGTTTGGAAAAAGAAAAAC
____________________________________________________________
consensus CTACGTGAAATGAAGTTGAGGATAGGAACGAAAAACCTCTGGGTTTGGAAAAAGAAAAAC
. : . : . : . : . : . :
JMSF038F24+ ACTGCTAAAACCCCTTCTTCTCTCTCTCTCTCTCTCCTCTNTTGCCCACACT
JMFF045O20+ ACTGCTAAAACCCCTTCTTCTCTCTCTCTCTCTCTCCTCTCTTGCCCACACTGTACGATC
____________________________________________________________
consensus ACTGCTAAAACCCCTTCTTCTCTCTCTCTCTCTCTCCTCTCTTGCCCACACTGTACGATC