Contig 012971:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024J07Sequence442012971 (4)ref|XP_009785572.1|3e-73PREDICTED: nucleoporin seh1 [Nicotiana sylvestris]539012971 (4)emb|CDP12138.1|2e-64unnamed protein product [Coffea canephora]
JMFF045A11Sequence633012971 (4)ref|XP_009785572.1|3e-51PREDICTED: nucleoporin seh1 [Nicotiana sylvestris]619012971 (4)emb|CDP12138.1|1e-76unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF045A11-                                                      AGTTAACAATACTAGA
                      ____________________________________________________________
consensus                                                         AGTTAACAATACTAGA
 
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rJMFF024J07-                                             AAGTCTATGAGTTGAAGTTAAGAAC
rJMFF045A11-          ATGAATAAATGTATAGTAACATCACTTAAAAATTGAAGTCTATGAGTTGAAGTTAAGAAC
                      ____________________________________________________________
consensus             ATGAATAAATGTATAGTAACATCACTTAAAAATTGAAGTCTATGAGTTGAAGTTAAGAAC
 
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rJMFF024J07-          CATATCACAAAATAGCACTATCANACTCTCAGGTATTGACTGCGTGTTTCCTTCGTCACT
rJMFF045A11-          CATATCACAAAATAGCACTATCAGACTCTCAGGTATTGACTGCGTGTTTCCTTCGTCACT
                      ____________________________________________________________
consensus             CATATCACAAAATAGCACTATCAGACTCTCAGGTATTGACTGCGTGTTTCCTTCGTCACT
 
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rJMFF024J07-          CAAAAGAAATAGTACTATCATAATCACATCCGGTGATGAGATGTGATACAGACTAATTTG
rJMFF045A11-          CAAAAGAAATAGTACTATCATAATCACATCCGGTGATGAGATGTGATACAGACTAATTTG
                      ____________________________________________________________
consensus             CAAAAGAAATAGTACTATCATAATCACATCCGGTGATGAGATGTGATACAGACTAATTTG
 
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rJMFF024J07-          TGGGTTCAAATATTGCCTGTTCACGCCNAATGCCATCTATGTTGGACTGCCACAATCGGA
rJMFF045A11-          TGGGTTCAAATATTGCCTGTTCACGCCAAATGCCATCTATGTTGGACTGCCACAATCGGA
                      ____________________________________________________________
consensus             TGGGTTCAAATATTGCCTGTTCACGCCAAATGCCATCTATGTTGGACTGCCACAATCGGA
 
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rJMFF024J07-          CAAGGCCATCGCTCCCTGTAGAAGCCAGGGTCATTCCGCTCATGTCCCATTCCNACTGCC
rJMFF045A11-          CAAGGCCATCGCTCCCTGTAGAAGCCAGGGTCATTCCGCTCATGTCCCATTCCAACTGCC
                      ____________________________________________________________
consensus             CAAGGCCATCGCTCCCTGTAGAAGCCAGGGTCATTCCGCTCATGTCCCATTCCAACTGCC
 
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rJMFF024J07-          ATACCTCGTTATCATGGGGAGAAAGCAGTGCAACCTTCTCAACCGTAAGCCTTCCATCAN
rJMFF045A11-          ATACCTCGTTATCATGGGGAGAAAGCAGTGCAACCTTCTCAACCGTAAGCCTTCCATCAG
                      ____________________________________________________________
consensus             ATACCTCGTTATCATGGGGAGAAAGCAGTGCAACCTTCTCAACCGTAAGCCTTCCATCAG
 
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rJMFF024J07-          GCTCGGGTTCTGATCCAACATGCCATATCGCAATCCCTTTGTAANTAGACACAGCTATTA
rJMFF045A11-          GCTCGGGTTCTGATCCAACATGCCATATCGCAATCCCTTTGTAAGTAGACACAGCTATTA
                      ____________________________________________________________
consensus             GCTCGGGTTCTGATCCAACATGCCATATCGCAATCCCTTTGTAAGTAGACACAGCTATTA
 
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rJMFF024J07-          CCTCATATGGCCTTCCAATGTTCGGAGCCCATGAAACTGCAAAAACCTGATCACCCTTAT
rJMFF045A11-          CCTCATATGGCCTTCCAATGTTCGGAGCCCATGAAATTGCAAAAACCTGATCACCCTTAT
                      ____________________________________________________________
consensus             CCTCATATGGCCTTCCAATGTTCGGAGCCCATGAAATTGCAAAAACCTGATCACCCTTAT
 
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rJMFF024J07-          CTGCTGGTANAGCTAATTCTGCNACTGGAANCCATCTCTGATGATCCTGATCAAATTCCC
rJMFF045A11-          CTGCTGGTAGAGCTAATACTGCAACTGGAAGCCATCTCTGATGATCCTGATCAAATTCCC
JMFF024J07+                                                 TGATGATCCTGATCAAATTCCC
                      ____________________________________________________________
consensus             CTGCTGGTAGAGCTAATTCTGCAACTGGAAGCCATCTCTGATGATCCTGATCAAATTCCC
 
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rJMFF024J07-          AAACCTTANAGGAATTCNACTGTGGGATATCA                            
rJMFF045A11-          AAACCTTAGAGGAATTCAACTGTGGGATATCAGAATTAAAACCCAAGACNAAGCTTGACT
JMFF024J07+           AAACCTTAGAGGAATTCAACTGTGGGATATCAGAATTAAAACCCAAGACAAAGCTTGACT
                      ____________________________________________________________
consensus             AAACCTTAGAGGAATTCAACTGTGGGATATCAGAATTAAAACCCAAGACAAAGCTTGACT
 
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rJMFF045A11-          GCT                                                         
JMFF024J07+           GCTGTGTTTCACCCTTTGATGGGTTCCAAGCAATTGATGCAGACAGGCATAAACATTTCC
                      ____________________________________________________________
consensus             GCTGTGTTTCACCCTTTGATGGGTTCCAAGCAATTGATGCAGACAGGCATAAACATTTCC
 
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JMFF024J07+           CAAATTTAGATATAGAATCAATGACATTCTGAAATTCAGCCTGAAGTTGCCAATTGTTCA
                      ____________________________________________________________
consensus             CAAATTTAGATATAGAATCAATGACATTCTGAAATTCAGCCTGAAGTTGCCAATTGTTCA
 
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JMFF024J07+           AGTTTAAAGGATCTTGAAGCTCAAATATTTTTGCTTGGCCGTCAGAATATGCAACAACCA
                      ____________________________________________________________
consensus             AGTTTAAAGGATCTTGAAGCTCAAATATTTTTGCTTGGCCGTCAGAATATGCAACAACCA
 
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JMFF024J07+           ATTTCAGGCTAGTGGGAGAGGCTCCAAATTGAATATCCAAAACACGACTTGAGTTTCTAT
JMFF045A11+                                         GAATATCCAAAACACGACTTGAGTTTCTAT
                      ____________________________________________________________
consensus             ATTTCAGGCTAGTGGGAGAGGCTCCAAATTGAATATCCAAAACACGACTTGAGTTTCTAT
 
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JMFF024J07+           CAAAGGATTTGCACGATTTCCATTGAACTGTCTCCAAATCTTCTGACACCTCCTCCCACA
JMFF045A11+           CAAAGGATTTGCACGATTTCCATTGAACTGTCTCCAAATCTTCTGACACCTCCTCCCACA
                      ____________________________________________________________
consensus             CAAAGGATTTGCACGATTTCCATTGAACTGTCTCCAAATCTTCTGACACCTCCTCCCACA
 
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JMFF024J07+           ATGACAAAGTTCCGTCATCACAAACACATGCAATTCCATCTCCATACTCTGGTGGAACCC
JMFF045A11+           ATGACAAAGTTCCGTCATCACAAACACATGCAATTCCATCTCCATACTCTGGTGGAACCC
                      ____________________________________________________________
consensus             ATGACAAAGTTCCGTCATCACAAACACATGCAATTCCATCTCCATACTCTGGTGGAACCC
 
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JMFF045A11+           AGACAATCTTGATCAGACCAGTCTCATGGACCCTAAATTTCGAAGAGCAAGTAAAAACTG
                      ____________________________________________________________
consensus             AGACAATCTTGATCAGACCAGTCTCATGGACCCTAAATTTCGAAGAGCAAGTAAAAACTG
 
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JMFF045A11+           AGGAATCTGGATCGTTAGAATCGTAGATAGCCACAGTTCCATCAGTCGAACCAGATGCTA
                      ____________________________________________________________
consensus             AGGAATCTGGATCGTTAGAATCGTAGATAGCCACAGTTCCATCAGTCGAACCAGATGCTA
 
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JMFF045A11+           ATCTCTGCCCGCTGTAATTCCATGCCGAGCATGTCGTGCCTTTTTCCAGCGTCACTAGAG
                      ____________________________________________________________
consensus             ATCTCTGCCCGCTGTAATTCCATGCCGAGCATGTCGTGCCTTTTTCCAGCGTCACTAGAG
 
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JMFF045A11+           CCTTATCCATCCCTTCTCCCTCTCTCTTTCTCAANATATATGCATTGGATAGTGAAGTTC
                      ____________________________________________________________
consensus             CCTTATCCATCCCTTCTCCCTCTCTCTTTCTCAANATATATGCATTGGATAGTGAAGTTC
 
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JMFF045A11+           CAGACTTCACCTTTGCATAAATGCCTGCTGGTACCAGAATTCTGGAAGTGAGTCCTCGTC
                      ____________________________________________________________
consensus             CAGACTTCACCTTTGCATAAATGCCTGCTGGTACCAGAATTCTGGAAGTGAGTCCTCGTC
 
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JMFF045A11+           GGCTGTAGCAAGGGAGGCGAAGTCCTGGTCGGCTGTCGCAGGGGAAGCGGAGTCCTTGTC
                      ____________________________________________________________
consensus             GGCTGTAGCAAGGGAGGCGAAGTCCTGGTCGGCTGTCGCAGGGGAAGCGGAGTCCTTGTC
 
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JMFF045A11+           GGCGGCTGTCGCTGTCCTCGTCGGCTGCTCGCAGGAGTCGCAGAATTGCAGGGGAGGGCG
                      ____________________________________________________________
consensus             GGCGGCTGTCGCTGTCCTCGTCGGCTGCTCGCAGGAGTCGCAGAATTGCAGGGGAGGGCG
 
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JMFF045A11+           GGAGATGGAGGAGGTGTGTTTAGAATTACATTTTAGGGTTTTGAACTTTCAAGTTTCACT
                      ____________________________________________________________
consensus             GGAGATGGAGGAGGTGTGTTTAGAATTACATTTTAGGGTTTTGAACTTTCAAGTTTCACT