clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF042J10 | Sequence | 643 | 012953 (6) | ref|XP_009628191.1| | 221 | PREDICTED: uncharacterized protein LOC104118618 [Nicotiana tomentosiformis] | 593 | 012953 (6) | ref|XP_009774502.1| | 203 | PREDICTED: uncharacterized protein LOC104224520 [Nicotiana sylvestris] |
JMFN025J10 | Sequence | 526 | 012953 (6) | ref|XP_004233274.1| | 138 | PREDICTED: uncharacterized protein LOC101267674 [Solanum lycopersicum] | |||||
JMSF008I19 | Sequence | 352 | 012953 (6) | ref|XP_009628191.1| | 103 | PREDICTED: uncharacterized protein LOC104118618 [Nicotiana tomentosiformis] | 736 | 012953 (6) | ref|XP_009774502.1| | 312 | PREDICTED: uncharacterized protein LOC104224520 [Nicotiana sylvestris] |
JMSF050C21 | Sequence | 665 | 003685 (6) | dbj|BAB41076.1| | 1e-127 | MAR-binding protein [Nicotiana tabacum] | 673 | 012953 (6) | ref|XP_009774502.1| | 301 | PREDICTED: uncharacterized protein LOC104224520 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF042J10- AAT
____________________________________________________________
consensus AAT
. : . : . : . : . : . :
rJMFF042J10- TAGTAATCAATACTTACATGTTGGTCATAGCACATACTTCCCAAAAGATATCATTCATAC
____________________________________________________________
consensus TAGTAATCAATACTTACATGTTGGTCATAGCACATACTTCCCAAAAGATATCATTCATAC
. : . : . : . : . : . :
rJMFF042J10- TTCATACTTTCATAGGTTGGAAAGTAGTGTTTCTGCAATGTGGCAACAATTTACTTGGTT
rJMSF008I19- ATTTACTTGGTT
____________________________________________________________
consensus TTCATACTTTCATAGGTTGGAAAGTAGTGTTTCTGCAATGTGGCAACAATTTACTTGGTT
. : . : . : . : . : . :
rJMFF042J10- TCCATTACAATACAAACACACTTCAATATATAATAAATGGGGAATAATATACTAAACTTG
rJMSF050C21- ATACAAACACACTTCAATATATAATAAATGGGGAATAATATACTAAACTTG
rJMSF008I19- TCCATTACAATACAAACACACTTCAATATATAATAAATGGGGAATAATATACTAAACTTG
____________________________________________________________
consensus TCCATTACAATACAAACACACTTCAATATATAATAAATGGGGAATAATATACTAAACTTG
. : . : . : . : . : . :
rJMFF042J10- ATATGATGGGTATATTAACAGTAATGTCAAGAATCTAAGCATTCCCATTGATGAGCAAGA
rJMSF050C21- ATATGATGGGTATATTAACAGTAATGTCAAGAATCTAAGCATTCCCATTGATGAGCAAGA
rJMSF008I19- ATATGATGGGTATATTAACAGTAATGTCAAGAATCTAAGCATTCCCATTGATGAGCAAGA
____________________________________________________________
consensus ATATGATGGGTATATTAACAGTAATGTCAAGAATCTAAGCATTCCCATTGATGAGCAAGA
. : . : . : . : . : . :
rJMFF042J10- GCATGAACAACACCATCAAAGCTATCAAACCTGGAACTCACCACATCAATCCCAACTCCA
rJMSF050C21- GCATGAACAACACCATCAAAGCTATCAAACCTGGAACTCACCACATCAATCCCAACTCCA
rJMSF008I19- GCATGAACAACACCATCAAAGCTATCAAACCTGGAACTCACCACATCAATCCCAACTCCA
____________________________________________________________
consensus GCATGAACAACACCATCAAAGCTATCAAACCTGGAACTCACCACATCAATCCCAACTCCA
. : . : . : . : . : . :
rJMFF042J10- AGCCTCTCGGCGCCGGAAGCCGTCACCGGACCGTGGGCGGCCACCACTAGCCCCGGGCAC
rJMSF050C21- AGCCTCTCGGCGCCGGAAGCCGTCACCGGACCGTGGGCGGCCACCACTAGCCCCGGGCAC
rJMSF008I19- AGCCTCTCGGCGCCGGAAGCCGTCACCGGACCGTGGGCGGCCACCACTAGCCCCGGGCAC
____________________________________________________________
consensus AGCCTCTCGGCGCCGGAAGCCGTCACCGGACCGTGGGCGGCCACCACTAGCCCCGGGCAC
. : . : . : . : . : . :
rJMFF042J10- ATCCTCCTCACCGTCTCCCAATCCAACCCGTACTCTCTCAAGCTCTTCAGCAGCCCCTCC
rJMSF050C21- ATCCTCCTCACCGTCTCCCAATCCAACCCGTACTCTCTCAAGCTCTTCAGCAGCCCCTCC
rJMSF008I19- ATCCTCCTCACCGTCTCCCAATCCAACCCGTACTCTCTCAAGCTCTTCAGCAGCCCCTCC
____________________________________________________________
consensus ATCCTCCTCACCGTCTCCCAATCCAACCCGTACTCTCTCAAGCTCTTCAGCAGCCCCTCC
. : . : . : . : . : . :
rJMFF042J10- ACTTCTCCGGTGCTCGAGAACACCATCGCATCAATCCCACACTCCTCTCCGCTCCTCCTC
rJMSF050C21- ACTTCTCCGGTGCTCGAGAACACCATCGCATCAATCCCACACTCCTCTCCGCTCCTCCTC
rJMSF008I19- ACTTCTCCGGTGCTCGAGAACACCATCGCATCAATCCCACACTCCTCTCCGCTCCTCCTC
____________________________________________________________
consensus ACTTCTCCGGTGCTCGAGAACACCATCGCATCAATCCCACACTCCTCTCCGCTCCTCCTC
. : . : . : . : . : . :
rJMFF042J10- ACCACCTCCGCCGCGCACGCCGGCCCTCCCCACCGCGTCTCGTACGCGTTAACTCTCACC
rJMSF050C21- ACCACCTCCGCCGCGCACGCCGGCCCTCCCCACCGCGTCTCGTACGCGTTAACTCTCACC
rJMSF008I19- ACCACCTCCGCCGCGCACGCCGGCCCTCCCCACCGCGTCTCGTACGCGTTAACTCTCACC
____________________________________________________________
consensus ACCACCTCCGCCGCGCACGCCGGCCCTCCCCACCGCGTCTCGTACGCGTTAACTCTCACC
. : . : . : . : . : . :
rJMFF042J10- GGAACCCACCCTTTCTTCGCCAAGTCCCGGAGGAACGCCGGCACCACCGG
rJMSF050C21- GGAACCCACCCTTTCTTCGCCAAGTCCCGGAGGAACGCCGGCACCACCGGCGGCTCCTCC
rJMSF008I19- GGAACCCACCCTTTCTTCGCCAAGTCCCGGAGGAACGCCGGCACCACCGGCGGCTCCTCC
JMFN025J10+ CGGCGGCTCCTCC
JMFF042J10+ TCGCCAAGTCCCGGAGGAACGCCGGCACCACCGGCGGCTCCTCC
____________________________________________________________
consensus GGAACCCACCCTTTCTTCGCCAAGTCCCGGAGGAACGCCGGCACCACCGGCGGCTCCTCC
. : . : . : . : . : . :
rJMSF050C21- AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
rJMSF008I19- AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
JMFN025J10+ AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
JMFF042J10+ AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
____________________________________________________________
consensus AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
. : . : . : . : . : . :
rJMSF050C21- GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
rJMSF008I19- GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
JMFN025J10+ GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
JMFF042J10+ GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
____________________________________________________________
consensus GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
. : . : . : . : . : . :
rJMSF050C21- TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
rJMSF008I19- TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
JMFN025J10+ TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
JMFF042J10+ TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
____________________________________________________________
consensus TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
. : . : . : . : . : . :
rJMSF050C21- GAAATTACCAAGATTTCTCCGG
rJMSF008I19- GAAATTACCAAGATTTCTCCGGTTGGGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
JMFN025J10+ GAAATTACCAAGATTTCTCCGGTTGGGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
JMSF008I19+ GGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
JMFF042J10+ GAAATTACCAAGATTTCTCCGGTTGGGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
____________________________________________________________
consensus GAAATTACCAAGATTTCTCCGGTTGGGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
. : . : . : . : . : . :
rJMSF008I19- TCTG
JMFN025J10+ TCTGAAAAGGCAGAAATTCCTGTTCTTGAAGAGAAGGCAAGGGGGGAAAAAGTGTTCGAG
JMSF008I19+ TCTGAAAAGGCAGAAATTCCTGTTCTTGAAGTGAAGGCAATGGCGG-AAAAGTGTTCGAG
JMFF042J10+ TCTGAAAAGGCAGAAATTCCTGTTCTTGAAGTGAAGGCAATGGCGG-AAAAGTGTTCGAG
____________________________________________________________
consensus TCTGAAAAGGCAGAAATTCCTGTTCTTGAAGTGAAGGCAATGGCGG-AAAAGTGTTCGAG
. : . : . : . : . : . :
JMFN025J10+ GAGGGGGTTAGGGTTTGGGGAAATATGGGAGTGGATAGAGGAAATGGTTTGCGGGGTGGT
JMSF008I19+ GAGGGGGTTAGGGTTTGGGGAAATATGGGAGTGGATAGAGGAAATGGTTTGCGGGGTGGT
JMFF042J10+ GAGGGGGTTAGGGTTTGGGGAAATATGGGAGTGGATAGAGGAAATGGTTTGCGGGGTGGT
____________________________________________________________
consensus GAGGGGGTTAGGGTTTGGGGAAATATGGGAGTGGATAGAGGAAATGGTTTGCGGGGTGGT
. : . : . : . : . : . :
JMFN025J10+ CTGAACAATGACGGTGGGGCACCAGAGAGGAGTCCAGCCTTTGAGGTGGATGAGATCCGA
JMSF008I19+ CTGAACAATGACGGTGGGGCACCAGAGAGGAGTCCAGCCTTTGAGGTGGATGAGATCCGA
JMFF042J10+ CTGAACAATGACGGTGGGGCACCAGAGAGGAGTCCAGCCTTTGAGGTGGATGAGATCCGA
____________________________________________________________
consensus CTGAACAATGACGGTGGGGCACCAGAGAGGAGTCCAGCCTTTGAGGTGGATGAGATCCGA
. : . : . : . : . : . :
JMFN025J10+ TAGCCTTGCGGCGTAATTCTGAGGAGTGGTGAAAGCTATGACTCTGTTTTTGCTCTGTGG
JMSF008I19+ TAGCCTTGCGGCGTAATTCTGAGGAGTGGTGAAAGCTATGACTCTGTTTTTGCTCTGTGG
JMFF042J10+ TAGCCTTGCGGCGTAATTCTGAGGAGTGGTGAAAGCTATGACTCTGTTTTTGCTCTGTGG
____________________________________________________________
consensus TAGCCTTGCGGCGTAATTCTGAGGAGTGGTGAAAGCTATGACTCTGTTTTTGCTCTGTGG
. : . : . : . : . : . :
JMFN025J10+ AGAGTTTGGAGTTCCCCAAGAAATTAGGGGAGG
JMSF008I19+ AGAGTTTGGAGTTCCCCAAGAAATTAGGGGAGGAGGGTGTTGCAGATTCAGGATTATCAT
JMFF042J10+ AGAGTTTGGAGTTCCCCAAGAAATTAGGGGAGGAGGGTGTTGCAGATTCAGGATTATCAT
____________________________________________________________
consensus AGAGTTTGGAGTTCCCCAAGAAATTAGGGGAGGAGGGTGTTGCAGATTCAGGATTATCAT
. : . : . : . : . : . :
JMSF008I19+ TGCCACATCTTTC
JMFF042J10+ TGCCACATCTTTCTGGGGAGATTGATACTTTCCAGCTTTGCTATTTTCATTTGAGAAAGT
____________________________________________________________
consensus TGCCACATCTTTCTGGGGAGATTGATACTTTCCAGCTTTGCTATTTTCATTTGAGAAAGT