Contig 012953:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042J10Sequence643012953 (6)ref|XP_009628191.1|221PREDICTED: uncharacterized protein LOC104118618 [Nicotiana tomentosiformis]593012953 (6)ref|XP_009774502.1|203PREDICTED: uncharacterized protein LOC104224520 [Nicotiana sylvestris]
JMFN025J10Sequence526012953 (6)ref|XP_004233274.1|138PREDICTED: uncharacterized protein LOC101267674 [Solanum lycopersicum]
JMSF008I19Sequence352012953 (6)ref|XP_009628191.1|103PREDICTED: uncharacterized protein LOC104118618 [Nicotiana tomentosiformis]736012953 (6)ref|XP_009774502.1|312PREDICTED: uncharacterized protein LOC104224520 [Nicotiana sylvestris]
JMSF050C21Sequence665003685 (6)dbj|BAB41076.1|1e-127MAR-binding protein [Nicotiana tabacum]673012953 (6)ref|XP_009774502.1|301PREDICTED: uncharacterized protein LOC104224520 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF042J10-                                                                   AAT
                      ____________________________________________________________
consensus                                                                      AAT
 
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rJMFF042J10-          TAGTAATCAATACTTACATGTTGGTCATAGCACATACTTCCCAAAAGATATCATTCATAC
                      ____________________________________________________________
consensus             TAGTAATCAATACTTACATGTTGGTCATAGCACATACTTCCCAAAAGATATCATTCATAC
 
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rJMFF042J10-          TTCATACTTTCATAGGTTGGAAAGTAGTGTTTCTGCAATGTGGCAACAATTTACTTGGTT
rJMSF008I19-                                                          ATTTACTTGGTT
                      ____________________________________________________________
consensus             TTCATACTTTCATAGGTTGGAAAGTAGTGTTTCTGCAATGTGGCAACAATTTACTTGGTT
 
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rJMFF042J10-          TCCATTACAATACAAACACACTTCAATATATAATAAATGGGGAATAATATACTAAACTTG
rJMSF050C21-                   ATACAAACACACTTCAATATATAATAAATGGGGAATAATATACTAAACTTG
rJMSF008I19-          TCCATTACAATACAAACACACTTCAATATATAATAAATGGGGAATAATATACTAAACTTG
                      ____________________________________________________________
consensus             TCCATTACAATACAAACACACTTCAATATATAATAAATGGGGAATAATATACTAAACTTG
 
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rJMFF042J10-          ATATGATGGGTATATTAACAGTAATGTCAAGAATCTAAGCATTCCCATTGATGAGCAAGA
rJMSF050C21-          ATATGATGGGTATATTAACAGTAATGTCAAGAATCTAAGCATTCCCATTGATGAGCAAGA
rJMSF008I19-          ATATGATGGGTATATTAACAGTAATGTCAAGAATCTAAGCATTCCCATTGATGAGCAAGA
                      ____________________________________________________________
consensus             ATATGATGGGTATATTAACAGTAATGTCAAGAATCTAAGCATTCCCATTGATGAGCAAGA
 
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rJMFF042J10-          GCATGAACAACACCATCAAAGCTATCAAACCTGGAACTCACCACATCAATCCCAACTCCA
rJMSF050C21-          GCATGAACAACACCATCAAAGCTATCAAACCTGGAACTCACCACATCAATCCCAACTCCA
rJMSF008I19-          GCATGAACAACACCATCAAAGCTATCAAACCTGGAACTCACCACATCAATCCCAACTCCA
                      ____________________________________________________________
consensus             GCATGAACAACACCATCAAAGCTATCAAACCTGGAACTCACCACATCAATCCCAACTCCA
 
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rJMFF042J10-          AGCCTCTCGGCGCCGGAAGCCGTCACCGGACCGTGGGCGGCCACCACTAGCCCCGGGCAC
rJMSF050C21-          AGCCTCTCGGCGCCGGAAGCCGTCACCGGACCGTGGGCGGCCACCACTAGCCCCGGGCAC
rJMSF008I19-          AGCCTCTCGGCGCCGGAAGCCGTCACCGGACCGTGGGCGGCCACCACTAGCCCCGGGCAC
                      ____________________________________________________________
consensus             AGCCTCTCGGCGCCGGAAGCCGTCACCGGACCGTGGGCGGCCACCACTAGCCCCGGGCAC
 
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rJMFF042J10-          ATCCTCCTCACCGTCTCCCAATCCAACCCGTACTCTCTCAAGCTCTTCAGCAGCCCCTCC
rJMSF050C21-          ATCCTCCTCACCGTCTCCCAATCCAACCCGTACTCTCTCAAGCTCTTCAGCAGCCCCTCC
rJMSF008I19-          ATCCTCCTCACCGTCTCCCAATCCAACCCGTACTCTCTCAAGCTCTTCAGCAGCCCCTCC
                      ____________________________________________________________
consensus             ATCCTCCTCACCGTCTCCCAATCCAACCCGTACTCTCTCAAGCTCTTCAGCAGCCCCTCC
 
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rJMFF042J10-          ACTTCTCCGGTGCTCGAGAACACCATCGCATCAATCCCACACTCCTCTCCGCTCCTCCTC
rJMSF050C21-          ACTTCTCCGGTGCTCGAGAACACCATCGCATCAATCCCACACTCCTCTCCGCTCCTCCTC
rJMSF008I19-          ACTTCTCCGGTGCTCGAGAACACCATCGCATCAATCCCACACTCCTCTCCGCTCCTCCTC
                      ____________________________________________________________
consensus             ACTTCTCCGGTGCTCGAGAACACCATCGCATCAATCCCACACTCCTCTCCGCTCCTCCTC
 
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rJMFF042J10-          ACCACCTCCGCCGCGCACGCCGGCCCTCCCCACCGCGTCTCGTACGCGTTAACTCTCACC
rJMSF050C21-          ACCACCTCCGCCGCGCACGCCGGCCCTCCCCACCGCGTCTCGTACGCGTTAACTCTCACC
rJMSF008I19-          ACCACCTCCGCCGCGCACGCCGGCCCTCCCCACCGCGTCTCGTACGCGTTAACTCTCACC
                      ____________________________________________________________
consensus             ACCACCTCCGCCGCGCACGCCGGCCCTCCCCACCGCGTCTCGTACGCGTTAACTCTCACC
 
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rJMFF042J10-          GGAACCCACCCTTTCTTCGCCAAGTCCCGGAGGAACGCCGGCACCACCGG          
rJMSF050C21-          GGAACCCACCCTTTCTTCGCCAAGTCCCGGAGGAACGCCGGCACCACCGGCGGCTCCTCC
rJMSF008I19-          GGAACCCACCCTTTCTTCGCCAAGTCCCGGAGGAACGCCGGCACCACCGGCGGCTCCTCC
JMFN025J10+                                                          CGGCGGCTCCTCC
JMFF042J10+                           TCGCCAAGTCCCGGAGGAACGCCGGCACCACCGGCGGCTCCTCC
                      ____________________________________________________________
consensus             GGAACCCACCCTTTCTTCGCCAAGTCCCGGAGGAACGCCGGCACCACCGGCGGCTCCTCC
 
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rJMSF050C21-          AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
rJMSF008I19-          AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
JMFN025J10+           AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
JMFF042J10+           AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
                      ____________________________________________________________
consensus             AGGCCGATAACCGACGGGACGGGGCAAAGAACTTTCTTTCTCCCTTCCCCGTCGCCCAGC
 
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rJMSF050C21-          GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
rJMSF008I19-          GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
JMFN025J10+           GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
JMFF042J10+           GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
                      ____________________________________________________________
consensus             GCCTCCACTAGACCCGTCGGGGTCGCAATCCGAGGCTCCACGACCCTGATTCTCTCCGGG
 
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rJMSF050C21-          TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
rJMSF008I19-          TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
JMFN025J10+           TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
JMFF042J10+           TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
                      ____________________________________________________________
consensus             TTTTCGCAGATTCTTGAAATGAAAGAGTCATCGAGAAGCTCCAGATCCTTACCCAGAGCT
 
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rJMSF050C21-          GAAATTACCAAGATTTCTCCGG                                      
rJMSF008I19-          GAAATTACCAAGATTTCTCCGGTTGGGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
JMFN025J10+           GAAATTACCAAGATTTCTCCGGTTGGGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
JMSF008I19+                                    GGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
JMFF042J10+           GAAATTACCAAGATTTCTCCGGTTGGGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
                      ____________________________________________________________
consensus             GAAATTACCAAGATTTCTCCGGTTGGGGACAAAGGGTACGTCCCTATGCTCGAAAGCGCT
 
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rJMSF008I19-          TCTG                                                        
JMFN025J10+           TCTGAAAAGGCAGAAATTCCTGTTCTTGAAGAGAAGGCAAGGGGGGAAAAAGTGTTCGAG
JMSF008I19+           TCTGAAAAGGCAGAAATTCCTGTTCTTGAAGTGAAGGCAATGGCGG-AAAAGTGTTCGAG
JMFF042J10+           TCTGAAAAGGCAGAAATTCCTGTTCTTGAAGTGAAGGCAATGGCGG-AAAAGTGTTCGAG
                      ____________________________________________________________
consensus             TCTGAAAAGGCAGAAATTCCTGTTCTTGAAGTGAAGGCAATGGCGG-AAAAGTGTTCGAG
 
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JMFN025J10+           GAGGGGGTTAGGGTTTGGGGAAATATGGGAGTGGATAGAGGAAATGGTTTGCGGGGTGGT
JMSF008I19+           GAGGGGGTTAGGGTTTGGGGAAATATGGGAGTGGATAGAGGAAATGGTTTGCGGGGTGGT
JMFF042J10+           GAGGGGGTTAGGGTTTGGGGAAATATGGGAGTGGATAGAGGAAATGGTTTGCGGGGTGGT
                      ____________________________________________________________
consensus             GAGGGGGTTAGGGTTTGGGGAAATATGGGAGTGGATAGAGGAAATGGTTTGCGGGGTGGT
 
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JMFN025J10+           CTGAACAATGACGGTGGGGCACCAGAGAGGAGTCCAGCCTTTGAGGTGGATGAGATCCGA
JMSF008I19+           CTGAACAATGACGGTGGGGCACCAGAGAGGAGTCCAGCCTTTGAGGTGGATGAGATCCGA
JMFF042J10+           CTGAACAATGACGGTGGGGCACCAGAGAGGAGTCCAGCCTTTGAGGTGGATGAGATCCGA
                      ____________________________________________________________
consensus             CTGAACAATGACGGTGGGGCACCAGAGAGGAGTCCAGCCTTTGAGGTGGATGAGATCCGA
 
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JMFN025J10+           TAGCCTTGCGGCGTAATTCTGAGGAGTGGTGAAAGCTATGACTCTGTTTTTGCTCTGTGG
JMSF008I19+           TAGCCTTGCGGCGTAATTCTGAGGAGTGGTGAAAGCTATGACTCTGTTTTTGCTCTGTGG
JMFF042J10+           TAGCCTTGCGGCGTAATTCTGAGGAGTGGTGAAAGCTATGACTCTGTTTTTGCTCTGTGG
                      ____________________________________________________________
consensus             TAGCCTTGCGGCGTAATTCTGAGGAGTGGTGAAAGCTATGACTCTGTTTTTGCTCTGTGG
 
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JMFN025J10+           AGAGTTTGGAGTTCCCCAAGAAATTAGGGGAGG                           
JMSF008I19+           AGAGTTTGGAGTTCCCCAAGAAATTAGGGGAGGAGGGTGTTGCAGATTCAGGATTATCAT
JMFF042J10+           AGAGTTTGGAGTTCCCCAAGAAATTAGGGGAGGAGGGTGTTGCAGATTCAGGATTATCAT
                      ____________________________________________________________
consensus             AGAGTTTGGAGTTCCCCAAGAAATTAGGGGAGGAGGGTGTTGCAGATTCAGGATTATCAT
 
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JMSF008I19+           TGCCACATCTTTC                                               
JMFF042J10+           TGCCACATCTTTCTGGGGAGATTGATACTTTCCAGCTTTGCTATTTTCATTTGAGAAAGT
                      ____________________________________________________________
consensus             TGCCACATCTTTCTGGGGAGATTGATACTTTCCAGCTTTGCTATTTTCATTTGAGAAAGT