Contig 012948:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015F24Sequence164012948 (7)588012948 (7)sp|P31853.2|ATPX_SPIOL2e-65RecName: Full=ATP synthase subunit b', chloroplastic; AltName: Full=ATP synthas
JMFF038J10Sequence488012948 (7)emb|CDP13530.1|6e-48unnamed protein product [Coffea canephora]692012948 (7)ref|XP_006353681.1|2e-72PREDICTED: ATP synthase subunit b', chloroplastic-like [Solanum tuberosum]
JMFF040D17Sequence394012948 (7)emb|CDP13530.1|2e-04unnamed protein product [Coffea canephora]701012948 (7)ref|XP_006353681.1|5e-70PREDICTED: ATP synthase subunit b', chloroplastic-like [Solanum tuberosum]
JMFN044M14Sequence473012948 (7)ref|XP_006353681.1|3e-38PREDICTED: ATP synthase subunit b', chloroplastic-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF015F24- CTTTGATAATTTAGAAATTTACGTAAA
rJMFF038J10- CTTTGATAATTTAGAAATTTACGTAAA
rJMFF040D17- AAATTTACGTAAA
                      ____________________________________________________________
consensus CTTTGATAATTTAGAAATTTACGTAAA
 
. : . : . : . : . : . :
rJMFF015F24- ACTGAAAATCTCTAAATAGAATTTATACAAATTAGATTTAAAGAGTGGGATTTAGATGCA
rJMFF038J10- ACTGAAAATCTCTAAATAGAATTTATACAAATTAGATTTAAAGAGTGGGATTTAGATGCA
rJMFF040D17- ACTGAAAATCTCTAAATAGAATTTATACAAATTAGATTTAAAGAGTGGGATTTAGATGCA
                      ____________________________________________________________
consensus ACTGAAAATCTCTAAATAGAATTTATACAAATTAGATTTAAAGAGTGGGATTTAGATGCA
 
. : . : . : . : . : . :
rJMFF015F24- GCAGCATATTTGTAATATATAATTTTTTTTCTTCTTTTTTCATAGATTGATAGAAAAAAA
rJMFF038J10- GCAGCATATTTGTAATATATAATTTTTTTTCTTCTTTTTTCATAGATTGATAGAAAAAAA
rJMFF040D17- GCAGCATATTTGTAATATATAATTTTTTTTCTTCTTTTTTCATAGATTGATAGAAAAAAA
                      ____________________________________________________________
consensus GCAGCATATTTGTAATATATAATTTTTTTTCTTCTTTTTTCATAGATTGATAGAAAAAAA
 
. : . : . : . : . : . :
rJMFF015F24- TTCCTAATTAACAGGGAGGACCTTCTTGACAATGTCATCACTGAGAGCTGAAATCTGGGA
rJMFF038J10- TTCCTAATTAACAGGGAGGACCTTCTTGACAATGTCATCACTGAGAGCTGAAATCTGGGA
rJMFF040D17- TTCCTAATTAACAGGGAGGACCTTCTTGACAATGTCATCACTGAGAGCTGAAATCTGGGA
                      ____________________________________________________________
consensus TTCCTAATTAACAGGGAGGACCTTCTTGACAATGTCATCACTGAGAGCTGAAATCTGGGA
 
. : . : . : . : . : . :
rJMFF015F24- ATCGAGAGCCTTTATGGTCTCCACCTTCTGGGTCTCCAGCTTGGCCAGCGCCTCCGTGAG
rJMFF038J10- ATCGAGAGCCTTTATGGTCTCCACCTTCTGGGTCTCCAGCTTGGCCAGCGCCTCCGTGAG
rJMFF040D17- ATCGAGAGCCTTTATGGTCTCCACCTTCTGGGTCTCCAGCTTGGCCAGCGCCTCCGTGAG
                      ____________________________________________________________
consensus ATCGAGAGCCTTTATGGTCTCCACCTTCTGGGTCTCCAGCTTGGCCAGCGCCTCCGTGAG
 
. : . : . : . : . : . :
rJMFF015F24- CTCCGCCTCCACCTTCTTACGCCCCTCCGCCAGCTTCTGCTCCACCTCCTCCTGCGTCTC
rJMFF038J10- CTCCGCCTCCACCTTCTTACGCCCCTCCGCCAGCTTCTGCTCCACCTCCTCCTGCGTCTC
rJMFF040D17- CTCCGCCTCCACCTTCTTACGCCCCTCCGCCAGCTTCTGCTCCACCTCCTCCTGCGTCTC
                      ____________________________________________________________
consensus CTCCGCCTCCACCTTCTTACGCCCCTCCGCCAGCTTCTGCTCCACCTCCTCCTGCGTCTC
 
. : . : . : . : . : . :
rJMFF015F24- CTTCTTCATCTTGTTGAGCGCGGCGGATATCTCCGCACGCGCCGCCTTCATCACCGCCGC
rJMFF038J10- CTTCTTCATCTTGTTGAGCGCGGCGGATATCTCCGCACGCGCCGCCTTCATCACCGCCGC
rJMFF040D17- CTTCTTCATCTTGTTGAGCGCGGCGGATATCTCCGCACGCGCCGCCTTCATCACCGCCGC
JMFN044M14+ CATCACCGCCGC
JMFF038J10+ TCACCGCCGC
                      ____________________________________________________________
consensus CTTCTTCATCTTGTTGAGCGCGGCGGATATCTCCGCACGCGCCGCCTTCATCACCGCCGC
 
. : . : . : . : . : . :
rJMFF015F24- GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
rJMFF038J10- GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
rJMFF040D17- GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
JMFN044M14+ GCCATGCTCCTCCAGATGCTTCACCTCCGCCGACGTGTCCTTCACGTTGTTCAGCTTTTC
JMFF038J10+ GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
                      ____________________________________________________________
consensus GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
 
. : . : . : . : . : . :
rJMFF015F24- CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
rJMFF038J10- CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
rJMFF040D17- CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
JMFN044M14+ CATGATGGCCGCGTCCCTGTTGTCCATGAACTTCCCCAGCGGGTTGAAGTAGATCTTGTC
JMFF038J10+ CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
                      ____________________________________________________________
consensus CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
 
. : . : . : . : . : . :
rJMFF015F24- CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTC
rJMFF038J10- CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTC
rJMFF040D17- CAGCGCGAACATCAGGAATAGGATCCCCTCCATGATTATCGGCAGCGTCAGGTTGAAGTC
JMFN044M14+ CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTT
JMFF038J10+ CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTC
                      ____________________________________________________________
consensus CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTC
 
. : . : . : . : . : . :
rJMFF015F24- GAACAGCGACGCCTTCTCGAT
rJMFF038J10- GAACAGCGACGCCTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
rJMFF040D17- GAACAGCGACGCCTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
JMFN044M14+ GAACAGTGACGCTTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGTGAGGGCGGT
JMFF038J10+ GAACAGCGACGCCTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
JMFF040D17+ CTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
                      ____________________________________________________________
consensus GAACAGCGACGCCTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
 
. : . : . : . : . : . :
rJMFF038J10- GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
rJMFF040D17- GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
JMFN044M14+ GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
JMFF038J10+ GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
JMFF040D17+ GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
                      ____________________________________________________________
consensus GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
 
. : . : . : . : . : . :
rJMFF038J10- TTTTG
rJMFF040D17- TTTTGGGAGTTCGGGTANGGTTAATTTC
JMFN044M14+ TTTTGGGAGTTCGGGTAGGGTTAATTTCGGAAGGGAAGCTGAAATTTTGAGCCTTGGGGC
JMFF038J10+ TTTTGGGAGTTCGGGTAGGGTTAATTTCGGAAGGGAAGCCGAAATTTTGAGCCTTGGGGC
JMFF040D17+ TTTTGGGAGTTCGGGTAGGGTTAATTTCGGAAGGGAAGCCGAAATTTTGAGCCTTGGGGC
                      ____________________________________________________________
consensus TTTTGGGAGTTCGGGTAGGGTTAATTTCGGAAGGGAAGCCGAAATTTTGAGCCTTGGGGC
 
. : . : . : . : . : . :
JMFN044M14+ AGGGAGAGCGGTGGGCATTAGGGCTTTGGAGGAAGCCATGATCATGTTAGCCATTGCTGC
JMFF038J10+ AGGGAGAGCGGTGGGCATTAGGGCTTTGGAGGAAGCCATGATCATGTTAGCCATTGCTGC
JMFF040D17+ AGGGAGAGCGGTGGGCATTAGGGCTTTGGAGGAAGCCATGATCATGTTAGCCATTGCTGC
                      ____________________________________________________________
consensus AGGGAGAGCGGTGGGCATTAGGGCTTTGGAGGAAGCCATGATCATGTTAGCCATTGCTGC
 
. : . : . : . : . : . :
JMFN044M14+ TCTTCTTCTTATTCTTCTTCCTATACTTTGCTGCTTGCAGA
JMFF038J10+ TCTTCTTCTTCTTCTTCTTCCTCTACTTTGCTGCTTGCAGAAGTGGAAATGAGTGAAT
JMFF015F24+ CTTCCTNTACTTTGCTGCTTGCAGAAGTGGAAANGAGNGAATAA
JMFF040D17+ TCTTCTTCTTCTTCTTCTTCCTCTACTTTGCTGCTTGCAGAAGTGGAAATGAGTGAATAA
                      ____________________________________________________________
consensus TCTTCTTCTTCTTCTTCTTCCTCTACTTTGCTGCTTGCAGAAGTGGAAATGAGTGAATAA
 
. : . : . : . : . : . :
JMFF015F24+ TTCTTTTTTTCTTTTTCTTTGTTTTTATTTTTTTTTTTGTGTTTTATATTTTGTGAGAAT
JMFF040D17+ TTCTTTTTTTCTTTTTCTTTGTTTTTAT--TTTTTTTTGTGTTTTATATTTTGTGAGAAT
                      ____________________________________________________________
consensus TTCTTTTTTTCTTTTTCTTTGTTTTTATTTTTTTTTTTGTGTTTTATATTTTGTGAGAAT
 
. : . : . : . : . : . :
JMFF015F24+ TTTGATTGGTGAGGAGAGGAGCCTAAAGATGAAAATCTAACAAAGTC
JMFF040D17+ TTTGATTGGTGAGGAGAGGAGCCTAAAGATGAAAATCTAACAAAGTCTTATCTCTTTCTC
                      ____________________________________________________________
consensus TTTGATTGGTGAGGAGAGGAGCCTAAAGATGAAAATCTAACAAAGTCTTATCTCTTTCTC