Contig 012911:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF030H13-                                                       TATGATGCATATGAT
                      ____________________________________________________________
consensus                                                          TATGATGCATATGAT
 
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rJMFF030H13-          ATGCATCTTTGGCATCAAAATTTGAAGAAAGCATATCTCAAAGAAAGAGATAAGATCAGC
                      ____________________________________________________________
consensus             ATGCATCTTTGGCATCAAAATTTGAAGAAAGCATATCTCAAAGAAAGAGATAAGATCAGC
 
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rJMFF030H13-          TTTTATGAACCAAAATAAAGACAACACCCACAATGTTTGTGAATATATCCTCCTCCTCTA
                      ____________________________________________________________
consensus             TTTTATGAACCAAAATAAAGACAACACCCACAATGTTTGTGAATATATCCTCCTCCTCTA
 
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rJMFF030H13-          ATCCCACAACTAAACAAATCTTTCCACCAGCATCTAGTCTAGGTCTAGGTATATATACAT
                      ____________________________________________________________
consensus             ATCCCACAACTAAACAAATCTTTCCACCAGCATCTAGTCTAGGTCTAGGTATATATACAT
 
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rJMFF030H13-          GAAATGAAGCTTTGTTCTTGCGGATGTACATAATATAAAGCAGGCCTGAATTACCCACCC
                      ____________________________________________________________
consensus             GAAATGAAGCTTTGTTCTTGCGGATGTACATAATATAAAGCAGGCCTGAATTACCCACCC
 
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rJMFF030H13-          CTCCTTCATTCATCTCACTTTTGATGTGTCTGTCTGTCTATTTAGTGCTCTACGCGCCTT
                      ____________________________________________________________
consensus             CTCCTTCATTCATCTCACTTTTGATGTGTCTGTCTGTCTATTTAGTGCTCTACGCGCCTT
 
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rJMFF030H13-          CTTCTCACTCCATACTCCGCCCGCATCTACAGTTTTCTCTTCAAAACCTTCTGATCGAGT
                      ____________________________________________________________
consensus             CTTCTCACTCCATACTCCGCCCGCATCTACAGTTTTCTCTTCAAAACCTTCTGATCGAGT
 
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rJMFF030H13-          TCTGGCAGATACATCTGTGTCTCCCTCCAGGCTTCCAGACACGATCATCATTATTGATTC
JMFN040H16+                                            TCCAGACACGATCATCATTATTGATTC
                      ____________________________________________________________
consensus             TCTGGCAGATACATCTGTGTCTCCCTCCAGGCTTCCAGACACGATCATCATTATTGATTC
 
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rJMFF030H13-          CACGACTTCAAAAATGGTTTACCCAATGAATCCTGTAATCCAGAGTTCTGGTTTGCCACG
JMFN040H16+           CACGACTTCAAAAATGGTTTACCCAATGAATCCTGTAATCCAGAGTTCTGGTTTGCCACG
JMFS108D10+                                                                     CG
                      ____________________________________________________________
consensus             CACGACTTCAAAAATGGTTTACCCAATGAATCCTGTAATCCAGAGTTCTGGTTTGCCACG
 
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rJMFF030H13-          TTAACCCATCCCATGTTGTTGGTAGGACCCCCGGACCCTTCATGGCTGCTGCTCAAATAG
JMFN040H16+           TTAACCCATCCCATGTTGTTGGTAGGACCCCCGGACCCTTCATGGCTGCTGCTCAAATAG
JMFS108D10+           TTAACCCATCCCATGTTGTTGGTAGGACCCCCGGACCCTTCATGGCTGCTGCTCAAATAG
                      ____________________________________________________________
consensus             TTAACCCATCCCATGTTGTTGGTAGGACCCCCGGACCCTTCATGGCTGCTGCTCAAATAG
 
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rJMFF030H13-          GCGAGCGGATTAGCTGGCTGCTGTGTGTTGCTCGCCGAAGGAATTCTTACCCCCATCTCA
JMFN040H16+           GCGAGCGGATTAGCTGGCTGCTGTGTGTTGCTCGCCGAAGGAATTCTTACCCCCATCTCA
JMFS108D10+           GCGAGCGGATTAGCTGGCTGCTGTGTGTTGCTCGCCGAAGGAATTCTTACCCCCATCTCA
                      ____________________________________________________________
consensus             GCGAGCGGATTAGCTGGCTGCTGTGTGTTGCTCGCCGAAGGAATTCTTACCCCCATCTCA
 
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rJMFF030H13-          TCATAGTTACCAGACTGCATGAACCGCTCTGTGGACCCCACCGTATCATAGGAGCTACCA
JMFN040H16+           TCATAGTTACCAGACTGCATGAACCGCTCTGTGGACCCCACCGTATCATAGGAGCTACCA
JMFS108D10+           TCATAGTTACCAGACTGCATGAACCGCTCTGTGGACCCCACCGTATCATAGGAGCTACCA
                      ____________________________________________________________
consensus             TCATAGTTACCAGACTGCATGAACCGCTCTGTGGACCCCACCGTATCATAGGAGCTACCA
 
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rJMFF030H13-          CGACATAATTCATTACACTCCGTTAAAACACTAAACAAGCTCTG                
JMFN040H16+           CGACATAATTCATTACACTCCGTTAAAACACTAAACAAGCTCTGATCAGACGCGTTTCCA
JMFS108D10+           CGACATAATTCATTACACTCCGTTAAAACACTAAACAAGCTCTGATCAGACGCGTTTCCA
                      ____________________________________________________________
consensus             CGACATAATTCATTACACTCCGTTAAAACACTAAACAAGCTCTGATCAGACGCGTTTCCA
 
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JMFN040H16+           CTTCTGATGCCCTGGGAGGGACCAACACCACCTTCTAAACCAGACCATCCACCATGGGCT
JMFS108D10+           CTTCTGATGCCCTGGGAGGGACCAACACCACCTTCTAAACCAGACCATCCACCATGGGCT
                      ____________________________________________________________
consensus             CTTCTGATGCCCTGGGAGGGACCAACACCACCTTCTAAACCAGACCATCCACCATGGGCT
 
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JMFN040H16+           CGGTTCTCGCCCGAAAACCAATTCTGGCCCAAGTCTCCACCATTCAAATGAGATTGTGGA
JMFS108D10+           CGGTTCTCGCCCGAAAACCAATTCTGGCCCAAGTCTCCACCATTCAAATGAGATTGTGGA
JMFF030H13+                                  CTGGCCCAAGTCTCCACCATTCAAATGAGATTGTGGA
                      ____________________________________________________________
consensus             CGGTTCTCGCCCGAAAACCAATTCTGGCCCAAGTCTCCACCATTCAAATGAGATTGTGGA
 
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JMFN040H16+           GCCGGCATGCGCACAGCATTCATATCCCAATCCTGCATGCCGCCAACATGCAAGTTTTCT
JMFS108D10+           GCCGGCATGCGCACAGCATTCATATCCCAATCCTGCATGCCGCCAACATGCAAGTTTTCT
JMFF030H13+           GCCGGCATGCGCACAGCATTCATATCCCAATCCTGCATGCCGCCAACATGCAAGTTTTCT
                      ____________________________________________________________
consensus             GCCGGCATGCGCACAGCATTCATATCCCAATCCTGCATGCCGCCAACATGCAAGTTTTCT
 
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JMFN040H16+           TGCCTTGGAAATGAGTATGTGCCTCCATCAGTGTACTCGTTCTCGTGAACATTCGGATGC
JMFS108D10+           TGCCTTGGAAATGAGTATGTGCCTCCATCAGTGTACTCGTTCTCGTGAACATTCGGATGC
JMFF030H13+           TGCCTTGGAAATGAGTATGTGCCTCCATCAGTGTACTCGTTCTCGTGAACATTCGGATGC
                      ____________________________________________________________
consensus             TGCCTTGGAAATGAGTATGTGCCTCCATCAGTGTACTCGTTCTCGTGAACATTCGGATGC
 
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JMFN040H16+           ATATAAAGATCATTCAGTCCTGTGT                                   
JMFS108D10+           ATATAAAGATCATTCAGTCCTGTGTGCTTCAGCACCAAAGGAAGTGATGCATGAA     
JMFF030H13+           ATATAAAGATCATTCAGTCCTGTGTGCTTCAGCACCAAAGGAAGTGATGCATGAACCTGT
                      ____________________________________________________________
consensus             ATATAAAGATCATTCAGTCCTGTGTGCTTCAGCACCAAAGGAAGTGATGCATGAACCTGT
 
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JMFF030H13+           TCCTTGAAAGGAAGTGATGCATGAACCGGTTCCTTGAAATGCCCGGAAAATTGACCAGAT
                      ____________________________________________________________
consensus             TCCTTGAAAGGAAGTGATGCATGAACCGGTTCCTTGAAATGCCCGGAAAATTGACCAGAT
 
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JMFF030H13+           TCTACCATTAAGTTGTCCCCTGACTGAAATGTCAACGGAGACTGTTTTGTTTCATTATGA
                      ____________________________________________________________
consensus             TCTACCATTAAGTTGTCCCCTGACTGAAATGTCAACGGAGACTGTTTTGTTTCATTATGA
 
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JMFF030H13+           ACTGAACCAGCATTGCTCTTTAAGAACGGTTGAAATAATTCACTGCGGTCATGAGAGTAA
                      ____________________________________________________________
consensus             ACTGAACCAGCATTGCTCTTTAAGAACGGTTGAAATAATTCACTGCGGTCATGAGAGTAA
 
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JMFF030H13+           GAATTGAAAAAAGACACCGAGTTAGGTTGTCTGTGCAACCTGTCCTTCCCAACATCATTT
                      ____________________________________________________________
consensus             GAATTGAAAAAAGACACCGAGTTAGGTTGTCTGTGCAACCTGTCCTTCCCAACATCATTT