Contig 012876:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020L09Sequence571012876 (2)ref|XP_009612191.1|2e-58PREDICTED: APO protein 4, mitochondrial [Nicotiana tomentosiformis]722012876 (2)ref|XP_004238237.2|2e-69PREDICTED: APO protein 4, mitochondrial [Solanum lycopersicum]

Alignment

This contig is upended


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rJMFF020L09-           CGATTTTCCTCTCGTTTTAATGCATCTGTTCAACAAGTGCCATAACTGAAATCCTTTAT
                      ____________________________________________________________
consensus              CGATTTTCCTCTCGTTTTAATGCATCTGTTCAACAAGTGCCATAACTGAAATCCTTTAT
 
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rJMFF020L09-          AGCAGAGAATAGAATGTTGTACATTTGTGTTACAAGAAACTGCATTTAGCCAAGAACACA
                      ____________________________________________________________
consensus             AGCAGAGAATAGAATGTTGTACATTTGTGTTACAAGAAACTGCATTTAGCCAAGAACACA
 
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rJMFF020L09-          AAGATGCCATTGTATTCGACTCAGATAGGCGAGGATAATCCATCAGCTTTCATTATGGAA
                      ____________________________________________________________
consensus             AAGATGCCATTGTATTCGACTCAGATAGGCGAGGATAATCCATCAGCTTTCATTATGGAA
 
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rJMFF020L09-          AAGTATTTGGATGGGGCGATTGCGCCTGCCTTAACACATATATCTATAACGGCTGGAGAA
                      ____________________________________________________________
consensus             AAGTATTTGGATGGGGCGATTGCGCCTGCCTTAACACATATATCTATAACGGCTGGAGAA
 
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rJMFF020L09-          TGTCCATAGTAGTTGCGACCTTCATCCACGAGTACTGGAGGATCTTGGGGTCTCTGGTAC
                      ____________________________________________________________
consensus             TGTCCATAGTAGTTGCGACCTTCATCCACGAGTACTGGAGGATCTTGGGGTCTCTGGTAC
 
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rJMFF020L09-          CAGACTCTCTTTGCAGGAACCAAATCACCCACTCCCGCCTTCTTCCAAAGGTGAGCTTCG
                      ____________________________________________________________
consensus             CAGACTCTCTTTGCAGGAACCAAATCACCCACTCCCGCCTTCTTCCAAAGGTGAGCTTCG
 
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rJMFF020L09-          TGCCAACTTTCATGTATTCTGCAGATTCGAGCCTTGTTCCCAGAATGTTGTCCCACATGA
                      ____________________________________________________________
consensus             TGCCAACTTTCATGTATTCTGCAGATTCGAGCCTTGTTCCCAGAATGTTGTCCCACATGA
 
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rJMFF020L09-          ACTTCTGAGCAGAGTTTGCAGACCTTTACTGGGAACACCACTAGCAGCTTCTGAACTCCA
                      ____________________________________________________________
consensus             ACTTCTGAGCAGAGTTTGCAGACCTTTACTGGGAACACCACTAGCAGCTTCTGAACTCCA
 
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rJMFF020L09-          TTTCTAAGTGCTTCCCATGCCTTTAGTGTCTCTATTGCCACCAGCTTCATCTCCTTGTCA
JMFF020L09+                                        CTCTATTGCCACCAGCTTCATCTCCTTGTCA
                      ____________________________________________________________
consensus             TTTCTAAGTGCTTCCCATGCCTTTAGTGTCTCTATTGCCACCAGCTTCATCTCCTTGTCA
 
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rJMFF020L09-          GATGGAGCTTCTGCAAGTTCGAAACCAGTTCTTGATTCCATATATGCACTTTGATCACTT
JMFF020L09+           GATGGAGCTTCTGCAAGTTCGAAACCAGTTCTTGATTCCATATATGCACTTTGATCACTT
                      ____________________________________________________________
consensus             GATGGAGCTTCTGCAAGTTCGAAACCAGTTCTTGATTCCATATATGCACTTTGATCACTT
 
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rJMFF020L09-          GGATTGGCTCCTGCATGTAAGCACAGTTCCACAATTGCTGGGATTCTGTCCTGACCAAAT
JMFF020L09+           GGATTGGCTCCTGCATGTAAGCACAGTTCCACAATTGCTGGGATTCTGTCCTGACCAAAT
                      ____________________________________________________________
consensus             GGATTGGCTCCTGCATGTAAGCACAGTTCCACAATTGCTGGGATTCTGTCCTGACCAAAT
 
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rJMFF020L09-          CTTTCTTGGGGTTTGGTGACATTATGAACTGTGTTTTGCACATGAATATGATATGCTTCC
JMFF020L09+           CTTTCTTGGGGTTTGGTGACATTATGAACTGTGTTTTGCACATGAATATGATATGCTTCC
                      ____________________________________________________________
consensus             CTTTCTTGGGGTTTGGTGACATTATGAACTGTGTTTTGCACATGAATATGATATGCTTCC
 
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rJMFF020L09-          ACA                                                         
JMFF020L09+           ACAGGAACCAGAATGTCATTCAAGCATGCTTTGATCCATTCATGAGCCTTGATCTTTGCA
                      ____________________________________________________________
consensus             ACAGGAACCAGAATGTCATTCAAGCATGCTTTGATCCATTCATGAGCCTTGATCTTTGCA
 
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JMFF020L09+           GCCTGCCTTCGATAACCGCCACAAGTTCGAATCAAATGGCCACTCTCCCCAACATACACT
                      ____________________________________________________________
consensus             GCCTGCCTTCGATAACCGCCACAAGTTCGAATCAAATGGCCACTCTCCCCAACATACACT
 
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JMFF020L09+           TCTGGACAGTATTTGCACGTCCAGACGGGCAAATGGCGGAGGAGATCGGAGACGCCGCGG
                      ____________________________________________________________
consensus             TCTGGACAGTATTTGCACGTCCAGACGGGCAAATGGCGGAGGAGATCGGAGACGCCGCGG
 
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JMFF020L09+           TAGAGTAAACCTCGCGCGTTGAGGGTTTCCTGGGCCAAAACCGCCGTGGCTTTGACCGGA
                      ____________________________________________________________
consensus             TAGAGTAAACCTCGCGCGTTGAGGGTTTCCTGGGCCAAAACCGCCGTGGCTTTGACCGGA
 
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JMFF020L09+           TAATCATTGGCCCGGTTCCGAATCTTCTCCATAATCATTGGCTTTAGCGTTTTCAAGTCC
                      ____________________________________________________________
consensus             TAATCATTGGCCCGGTTCCGAATCTTCTCCATAATCATTGGCTTTAGCGTTTTCAAGTCC
 
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JMFF020L09+           ACCGCCTTCGAATTTGAGCTGTAGAATCGGCGCCATCCCTTCGGGGTTTCCAACATCATC
                      ____________________________________________________________
consensus             ACCGCCTTCGAATTTGAGCTGTAGAATCGGCGCCATCCCTTCGGGGTTTCCAACATCATC