| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020K22 | Sequence | 557 | 012875 (3) | ref|XP_009783320.1| | 1e-37 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 | 758 | 001291 (3) | ref|XP_009783324.1| | 2e-106 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 |
| JMSF008L10 | Sequence | 475 | 012875 (3) | ref|XP_009783320.1| | 5e-41 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 | 684 | 001291 (3) | ref|XP_006359984.1| | 9e-70 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 |
| JMSF031N07 | Sequence | 689 | 012875 (3) | ref|XP_009783320.1| | 8e-71 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 | 608 | 001291 (3) | ref|XP_011466400.1| | 2e-48 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 |
This contig is upended
. : . : . : . : . : . :
JMSF031N07+ CCAATGA
____________________________________________________________
consensus CCAATGA
. : . : . : . : . : . :
JMSF031N07+ GTGAGTTANTGGTGAAGTGGATATGTCTGATACTATTCAAATTTGAAAAGGATTTTGGTA
____________________________________________________________
consensus GTGAGTTANTGGTGAAGTGGATATGTCTGATACTATTCAAATTTGAAAAGGATTTTGGTA
. : . : . : . : . : . :
JMSF031N07+ TTACTCCAGATATCTGGTTCTGGTCTATCTGAAATCTATTTAGCTTTGGAAGATAGCCAA
____________________________________________________________
consensus TTACTCCAGATATCTGGTTCTGGTCTATCTGAAATCTATTTAGCTTTGGAAGATAGCCAA
. : . : . : . : . : . :
JMSF031N07+ GCTCATCAGGCAAAGATCCGGACAAATTGTTCCCATTTAGAAGCAGTAGTCTCAAAGATT
____________________________________________________________
consensus GCTCATCAGGCAAAGATCCGGACAAATTGTTCCCATTTAGAAGCAGTAGTCTCAAAGATT
. : . : . : . : . : . :
JMSF031N07+ TGATGTTTCCTATCTCCTTTGGTATACTACCAGTCAACTCATTCCACATGAAATTTAAAA
JMSF008L10+ TACCAGTCAACTCATTCCACATGAAATTTAAAA
JMFF020K22+ CCACATGAAATTTAAAA
____________________________________________________________
consensus TGATGTTTCCTATCTCCTTTGGTATACTACCAGTCAACTCATTCCACATGAAATTTAAAA
. : . : . : . : . : . :
JMSF031N07+ TTAGAAGATGAGAAAATAATCCCAGCTCCGGTGCTAAATTTCCAGACAGATTCATGTTCA
JMSF008L10+ TTAGAAGATGAGAAAATAATCCCAGCTCCGGTGCTAAATTTCCAGACAGATTCATGTTCA
JMFF020K22+ TTAGAAGATGAGAAAATAATCCCAGCTCCGGTGCTAAATTTCCAGACAGATTCATGTTCA
____________________________________________________________
consensus TTAGAAGATGAGAAAATAATCCCAGCTCCGGTGCTAAATTTCCAGACAGATTCATGTTCA
. : . : . : . : . : . :
JMSF031N07+ TTAGATGAATCTCCCTGATATGAAAGTAGCCATCGTCATCTCTAGCTGCAGGGAAACAAA
JMSF008L10+ TTAGATGAATCTCCCTGATATGAAAGTAGCCATCGTCATCTCTAGCTGCAGGGAAACAAA
JMFF020K22+ TTAGATGAATCTCCCTGATATGAAAGTAGCCATCGTCATCTCTAGCTGCAGGGAAACAAA
____________________________________________________________
consensus TTAGATGAATCTCCCTGATATGAAAGTAGCCATCGTCATCTCTAGCTGCAGGGAAACAAA
. : . : . : . : . : . :
JMSF031N07+ TAACTCCAGTCCAGTTTGACGTGCAAGGATCTCCCTTCTTCCAATTCTTAAGATTCTTCA
JMSF008L10+ TAACTCCAGTCCAGTTTGACGTGCAAGGATCTCCCTTCTTCCAATTCTTAAGATTCTTCA
JMFF020K22+ TAACTCCAGTCCAGTTTGACGTGCAAGGATCTCCCTTCTTCCAATTCTTAAGATTCTTCA
____________________________________________________________
consensus TAACTCCAGTCCAGTTTGACGTGCAAGGATCTCCCTTCTTCCAATTCTTAAGATTCTTCA
. : . : . : . : . : . :
JMSF031N07+ CGCCATCAATCAAACTACTCTTCACTGTTGTCAATGCCGAGACTTCAGCCGGGTCAGTAA
JMSF008L10+ CGCCATCAATCAAACTACTCTTCACTGTTGTCAATGCCGAGACTTCAGCCGGGTCAGTAA
JMFF020K22+ CGCCATCAATCAAACTACTCTTCACTGTTGTCAATGCCGAGACTTCAGCCGGGTCAGTAA
____________________________________________________________
consensus CGCCATCAATCAAACTACTCTTCACTGTTGTCAATGCCGAGACTTCAGCCGGGTCAGTAA
. : . : . : . : . : . :
JMSF031N07+ CTTGAGCAACCACAAGCTTCAGAAAGCAAGCAAATGCCACAACAAAAACAAATCCATAAG
JMSF008L10+ CTTGAGCAACCACAAGCTTCAGAAAGCAAGCAAATGCCACAACAAAAACAAATCCATAAG
JMFF020K22+ CTTGAGCAACCACAAGCTTCAGAAAGCAAGCAAATGCCACAACAAAAACAAATCCATAAG
____________________________________________________________
consensus CTTGAGCAACCACAAGCTTCAGAAAGCAAGCAAATGCCACAACAAAAACAAATCCATAAG
. : . : . : . : . : . :
JMSF031N07+ GCCTTAGTCTGTCCATCTTGAATCCCTTAAATTAAAGCAAGAGAAGGGAGGAGACTGGAA
JMSF008L10+ GCCTTAGTCTGTCCATCTTGAATCCCTTAAATTAAAGCAAGAGAAGGGAGGAGACTGGAA
JMFF020K22+ GCCTTAGTCTGTCCATCTTGAATCCCTTAAATTAAAGCAAGAGAAGGGAGGAGACTGGAA
____________________________________________________________
consensus GCCTTAGTCTGTCCATCTTGAATCCCTTAAATTAAAGCAAGAGAAGGGAGGAGACTGGAA
. : . : . : . : . : . :
JMSF031N07+ TGAATGGCGATTCTTTTCCAAGTCAATAATTGAAGAAAGCGTCTCATGCCAGAGATTGTG
JMSF008L10+ TGAATGGCGATTCTTTTCCAAGTCAATAATTGAAGAAAGCGTCTCATGCCAGAGATTGTG
JMFF020K22+ TGAATGGCGATTCTTTTCCAAGTCAATAATTGAAGAAAGCGTCTCATGCCAGAGATTGTG
____________________________________________________________
consensus TGAATGGCGATTCTTTTCCAAGTCAATAATTGAAGAAAGCGTCTCATGCCAGAGATTGTG
. : . : . : . : . : . :
JMSF031N07+ CAAAAACACACCCCAAACTC
JMSF008L10+ CAAAAACACACCCCAAACTC
JMFF020K22+ CAAAAACACACCCCAAACTCAAAGTCAAAATGAAAACCCATTTAGTGGGAGATAAAAGAA
____________________________________________________________
consensus CAAAAACACACCCCAAACTCAAAGTCAAAATGAAAACCCATTTAGTGGGAGATAAAAGAA
. : . : . : . : . : . :
JMFF020K22+ AAACATCACAATCAAGAAAATGGCGGTGGACTTTTATACAAAACACCCCTCCAAAATCAA
____________________________________________________________
consensus AAACATCACAATCAAGAAAATGGCGGTGGACTTTTATACAAAACACCCCTCCAAAATCAA