Contig 012858:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015D09Sequence275012858 (3)255012858 (3)
JMSF025H01Sequence672014673ref|XP_009595425.1|2e-81PREDICTED: malate dehydrogenase [NADP], chloroplastic-like isoform X1 [Nicotian635012858 (3)ref|XP_009599413.1|9e-97PREDICTED: malate dehydrogenase [NADP], chloroplastic, partial [Nicotiana tomen

Alignment

This contig is upended


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rJMSF025H01+                                CACTCAGGTTCCTGATTTTCTAAATGCTAAAATAAATG
                      ____________________________________________________________
consensus                                   CACTCAGGTTCCTGATTTTCTAAATGCTAAAATAAATG
 
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rJMSF025H01+          GCTTGCCTGTAAAAGAGGTTATTAAAGATACTAAATGGCTCGAGCAAGAGTTTACAGAAA
                      ____________________________________________________________
consensus             GCTTGCCTGTAAAAGAGGTTATTAAAGATACTAAATGGCTCGAGCAAGAGTTTACAGAAA
 
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rJMSF025H01+          AGGTCCAGAAGAGAGGTGGAGCGCTTATTCAGAAATGGGGAAGATCTTCTGCTGCATCGA
                      ____________________________________________________________
consensus             AGGTCCAGAAGAGAGGTGGAGCGCTTATTCAGAAATGGGGAAGATCTTCTGCTGCATCGA
 
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rJMSF025H01+          CTGCAGTATCAATTGTCGATGCTATTAAGTCTCTCGTTACCCCAACACCTGAAGGCGATT
                      ____________________________________________________________
consensus             CTGCAGTATCAATTGTCGATGCTATTAAGTCTCTCGTTACCCCAACACCTGAAGGCGATT
 
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rJMSF025H01+          GGTTCTCTACCGGAGTATATACCAGTGGAAATCCTTATGGCATAGCCGAGGATATAGTTT
                      ____________________________________________________________
consensus             GGTTCTCTACCGGAGTATATACCAGTGGAAATCCTTATGGCATAGCCGAGGATATAGTTT
 
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rJMSF025H01+          TCAGCATGCCATGCAGGTCAAAAGGAGATGGCGATTATGAACTAGTTAAGGATGTAATAT
                      ____________________________________________________________
consensus             TCAGCATGCCATGCAGGTCAAAAGGAGATGGCGATTATGAACTAGTTAAGGATGTAATAT
 
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rJMSF025H01+          TTGATGACTACCTATGGAGCCGGATAAAGAAGACCGAAGCTGAGTTGCTGGCCGAGAAGA
                      ____________________________________________________________
consensus             TTGATGACTACCTATGGAGCCGGATAAAGAAGACCGAAGCTGAGTTGCTGGCCGAGAAGA
 
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rJMSF025H01+          AATGTGTAGCCCATCTCACAGGAGAGGGAATAGCTGTGTGTGATTTGCCCGGGGATACCA
                      ____________________________________________________________
consensus             AATGTGTAGCCCATCTCACAGGAGAGGGAATAGCTGTGTGTGATTTGCCCGGGGATACCA
 
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rJMSF025H01+          TGCTTCCCGGAGAAATGTGAAATGGGAAAAAAGCTTTCAATGGAATTTATCAAGAAGATT
rJMFF015D09+                                   GAAAAAAGCTTTCAATGGAATTTATCAAGAAGATT
JMFF015D09-                                    GAAAAAAGCTTTCAATGGAATTTATCAAGAAGATT
                      ____________________________________________________________
consensus             TGCTTCCCGGAGAAATGTGAAATGGGAAAAAAGCTTTCAATGGAATTTATCAAGAAGATT
 
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rJMSF025H01+          ATTTCAACAAGAGCCTGTGCATGAGTAGATATATATGTTCATGAAATACTGCAATTGAAA
rJMFF015D09+          ATTTCAACAAGAGCCTGTGCATGAGTAGATATATATGTTCATGAAATACTGCAATTGAAA
JMFF015D09-           ATTTCAACAAGAGCCTGTGCATGAGTAGATATATATGTTCATGAAATACTGCAATTGAAA
                      ____________________________________________________________
consensus             ATTTCAACAAGAGCCTGTGCATGAGTAGATATATATGTTCATGAAATACTGCAATTGAAA
 
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rJMSF025H01+          TCTACTGCAGCCCTGTGGAGTTTATGTAGCATACACGTTAATTCAACCAATAAATGT   
rJMFF015D09+          TCTACTGCAGCCCTGTGGAGTTTATGTAGCATACACGTTAATTCAACCAATAAATGTAGT
JMFF015D09-           TCTACTGCAGCCCTGTGGAGTTTATGTAGCATACACGTTAATTCAACCAATAAATGTAGT
                      ____________________________________________________________
consensus             TCTACTGCAGCCCTGTGGAGTTTATGTAGCATACACGTTAATTCAACCAATAAATGTAGT
 
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rJMFF015D09+          AACAATTCAAAGGTACTGTTTATGGTGGACAAATGCAGATCATTTCCAGTTTTATCTTAG
JMFF015D09-           AACAATTCAAAGGTACTGTTTATGGTGGACAAATGCAGATCATTTCCAGTTTTATCTTAG
                      ____________________________________________________________
consensus             AACAATTCAAAGGTACTGTTTATGGTGGACAAATGCAGATCATTTCCAGTTTTATCTTAG
 
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rJMFF015D09+          TAATAATTTTGATTCAAATCAAGAACTACGCC                            
JMFF015D09-           TAATAATTTTGATTCAAATCAAGAACTACGCCTAAAAGCGGTTTATATATAAAAAAAAAA
                      ____________________________________________________________
consensus             TAATAATTTTGATTCAAATCAAGAACTACGCCTAAAAGCGGTTTATATATAAAAAAAAAA