| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014F07 | Sequence | 606 | 012854 (3) | emb|CDP07547.1| | 3e-55 | unnamed protein product [Coffea canephora] | 747 | 005435 (3) | ref|XP_002510353.1| | 2e-139 | conserved hypothetical protein [Ricinus communis] gb|EEF52540.1| conserved hypot |
| JMFF027H11 | Sequence | 201 | 012854 (3) | ref|XP_009805014.1| | 4e-16 | PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Nicotia | 756 | 005435 (3) | ref|XP_002510353.1| | 3e-92 | conserved hypothetical protein [Ricinus communis] gb|EEF52540.1| conserved hypot |
| JMSF011I21 | Sequence | 281 | 012854 (3) | ref|XP_009612192.1| | 5e-30 | PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Nicotia | 767 | 005435 (3) | ref|XP_002510353.1| | 5e-129 | conserved hypothetical protein [Ricinus communis] gb|EEF52540.1| conserved hypot |
This contig is upended
. : . : . : . : . : . :
JMFF014F07+ TCATCA
____________________________________________________________
consensus TCATCA
. : . : . : . : . : . :
JMFF014F07+ GGAATGACAAGAGGATTAGTTCTCAGACTCTTGACAGTACCAAAAGGCCCAGCTTTTTGC
____________________________________________________________
consensus GGAATGACAAGAGGATTAGTTCTCAGACTCTTGACAGTACCAAAAGGCCCAGCTTTTTGC
. : . : . : . : . : . :
JMFF014F07+ GGTTTATCCAACACCACAATTTGCTGCTCTACATTACCCTTTTGCTGCTCCGCTAGCCGT
____________________________________________________________
consensus GGTTTATCCAACACCACAATTTGCTGCTCTACATTACCCTTTTGCTGCTCCGCTAGCCGT
. : . : . : . : . : . :
JMSF011I21+ TGTCAGACAACTTC
JMFF014F07+ AGCTTTTCAGTTAGCCCCCGCACCTGCTTCTGCAACTCACCATTCCTGTCAGACAACTTC
____________________________________________________________
consensus AGCTTTTCAGTTAGCCCCCGCACCTGCTTCTGCAACTCACCATTCCTGTCAGACAACTTC
. : . : . : . : . : . :
JMSF011I21+ ATGATCTCCGATTTCAACATGTTTACCCGCTCAGAAGATTCACACGAGGAAGAGTCGCCC
JMFF014F07+ ATGATCTCCGATTTCAACATGTTTACCCGCTCAGAAGATTCACACGAGGAAGAGTCGCCC
____________________________________________________________
consensus ATGATCTCCGATTTCAACATGTTTACCCGCTCAGAAGATTCACACGAGGAAGAGTCGCCC
. : . : . : . : . : . :
JMSF011I21+ TGAAGATTCAATTTGGAGAGTTTGCGAGTCTGGGTCTGCGGCGGATTGGATGAGAAGAAT
JMFF027H11+ TGGATGAGAAGAAT
JMFF014F07+ TGAAGATTCAATTTGGAGAGTTTGCGAGTCTGGGTCTGCGGCGGATTGGATGAGAAGAAT
____________________________________________________________
consensus TGAAGATTCAATTTGGAGAGTTTGCGAGTCTGGGTCTGCGGCGGATTGGATGAGAAGAAT
. : . : . : . : . : . :
JMSF011I21+ CCATTAGGGTAGAGGAAAGCGAAGACGCAACCCATCAGAACTCCGAAAGCTATCGCGGCC
JMFF027H11+ CCATTAGGGTAGAGGAAAGCGAAGACGCAACCCATCAGAACTCCGAAAGCTATCGCGGCC
JMFF014F07+ CCATTAGGGTAGAGGAAAGCGAAGACGCAACCCATCAGAACTCCGAAAGCTATCGCGGCC
____________________________________________________________
consensus CCATTAGGGTAGAGGAAAGCGAAGACGCAACCCATCAGAACTCCGAAAGCTATCGCGGCC
. : . : . : . : . : . :
JMSF011I21+ CCGATTCGAGATCCGCGTGTAGATTGGCCGGATTTCTCTCTCCGACCAGCCATGTTTCCT
JMFF027H11+ CCGATTCGAGATCCGCGTGTAGATTGGCCGGATTTCTCTCTCCGACCAGCCATGTTTCCT
JMFF014F07+ CCGATTCGAGATCCGCGTGTAGATTGGCCGGATTTCCCTCTCCGACCAGCCATGTTTCCT
____________________________________________________________
consensus CCGATTCGAGATCCGCGTGTAGATTGGCCGGATTTCTCTCTCCGACCAGCCATGTTTCCT
. : . : . : . : . : . :
JMSF011I21+ CCTCTCTTACAAGAAAACTTTCCTC
JMFF027H11+ CCTCTCTTACAAGAAAACTTTCCTCTCTTATTTCTCCCAAAGACAGGAAAAAATCTTTCT
JMFF014F07+ CCTCTCTTACAAGAAAACTTTCCTCTCTTATTTCTCCCAAAGACAGGAAAAAATCTTTCT
____________________________________________________________
consensus CCTCTCTTACAAGAAAACTTTCCTCTCTTATTTCTCCCAAAGACAGGAAAAAATCTTTCT
. : . : . : . : . : . :
JMFF027H11+ AGACCAT
JMFF014F07+ AGACCATGAAGTGAAGATTACTCCACTTTGCAAAGAAGGAAATAAAAATCCAAACTTGAA
____________________________________________________________
consensus AGACCATGAAGTGAAGATTACTCCACTTTGCAAAGAAGGAAATAAAAATCCAAACTTGAA
. : . : . : . : . : . :
JMFF014F07+ TACGTTCTTGACTTTTGGTTCTAAAAGCTCTGTCCCGATCGTATTTATTATATATATATC
____________________________________________________________
consensus TACGTTCTTGACTTTTGGTTCTAAAAGCTCTGTCCCGATCGTATTTATTATATATATATC