Contig 012847:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011I03Sequence513012847 (2)ref|XP_009783500.1|4e-04PREDICTED: E3 ubiquitin-protein ligase RLIM [Nicotiana sylvestris] ref|XP_009783692017998ref|XP_009783500.1|3e-15PREDICTED: E3 ubiquitin-protein ligase RLIM [Nicotiana sylvestris] ref|XP_009783
JMFF049L02Sequence607012847 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF049L02+ GGTAGAATGGAACGTTTCACGGAATGCCCAAGTAATGAA
                      ____________________________________________________________
consensus GGTAGAATGGAACGTTTCACGGAATGCCCAAGTAATGAA
 
. : . : . : . : . : . :
JMFF049L02+ CTAAGCTTACATTCAACAAGCATCATACACAATATACATTGCAACTTATAAGGATTAGAT
                      ____________________________________________________________
consensus CTAAGCTTACATTCAACAAGCATCATACACAATATACATTGCAACTTATAAGGATTAGAT
 
. : . : . : . : . : . :
JMFF049L02+ CTCAAAGTATGCATTAAGGACTTCAACTAAAGATTTTCTAAGAAAACATAGACATTTTCC
                      ____________________________________________________________
consensus CTCAAAGTATGCATTAAGGACTTCAACTAAAGATTTTCTAAGAAAACATAGACATTTTCC
 
. : . : . : . : . : . :
JMFF049L02+ AATTTCCATGGAGATAGGCCATTTAAGCACATATAATGATAGGGAAAAATTTAAATTAAA
                      ____________________________________________________________
consensus AATTTCCATGGAGATAGGCCATTTAAGCACATATAATGATAGGGAAAAATTTAAATTAAA
 
. : . : . : . : . : . :
JMFF049L02+ AACATATACGGGAGAATAATTAAACCACTTAGCTAAAATAAGATAGCAGAACAATAATCA
                      ____________________________________________________________
consensus AACATATACGGGAGAATAATTAAACCACTTAGCTAAAATAAGATAGCAGAACAATAATCA
 
. : . : . : . : . : . :
JMFF049L02+ TAAGAGAAGAAGAGAAATTCAACGGTCCAACCGGAAAAGAGGAACGGTGGATAGAGCTCA
JMFF011I03+ CCGGAAAAGAGGAACGGTGGATAGAGCTCA
                      ____________________________________________________________
consensus TAAGAGAAGAAGAGAAATTCAACGGTCCAACCGGAAAAGAGGAACGGTGGATAGAGCTCA
 
. : . : . : . : . : . :
JMFF049L02+ AAGAGCGTCGTGGATTATCACAGCCATTCAAATCGTTCCGGTCAACACGGCGATCAGTAC
JMFF011I03+ AAGAGCGTCGTGGATTATCACAGCCATTCAAATCGTTCCGGTCAACACGGCGATCAGTAC
                      ____________________________________________________________
consensus AAGAGCGTCGTGGATTATCACAGCCATTCAAATCGTTCCGGTCAACACGGCGATCAGTAC
 
. : . : . : . : . : . :
JMFF049L02+ TGCTGCTATGGCTATGGCTGTGGCGGCGGTGATTGCGGTGACGATTGATATGGTTGTCGT
JMFF011I03+ TGCTGCTATGGCTATGGCTGTGGCGGCGGTGATTGCGGTGACGATTGATATGGTTGTCGT
                      ____________________________________________________________
consensus TGCTGCTATGGCTATGGCTGTGGCGGCGGTGATTGCGGTGACGATTGATATGGTTGTCGT
 
. : . : . : . : . : . :
JMFF049L02+ GAGAAGAGATTTGATCGGACTCAATCACGGGTATGCTCCGACCCAAACGGGTCCTCCGGT
JMFF011I03+ GGGAAGAGATTTGATCGGACTCAATCACGGGTATGCTCCGACCCAAACGGGTCCTCCGGT
                      ____________________________________________________________
consensus GGGAAGAGATTTGATCGGACTCAATCACGGGTATGCTCCGACCCAAACGGGTCCTCCGGT
 
. : . : . : . : . : . :
JMFF049L02+ TGTGGAAAAGCTCCAAAGCTTTCGTCATGCAACGGTGACCCGGAAATTCTCCGACTCCTG
JMFF011I03+ TGTGGAAAAGCTCCAAAGCTTTCGTCATGCAACGGTGACCCGGAAATTCTCCGACTCCTG
                      ____________________________________________________________
consensus TGTGGAAAAGCTCCAAAGCTTTCGTCATGCAACGGTGACCCGGAAATTCTCCGACTCCTG
 
. : . : . : . : . : . :
JMFF049L02+ GTCACGTTGAGAAGGATGATGGCAAG
JMFF011I03+ GTCACGTTGAGAAGGATGATGGCAAGACAGTGAGACACGATAAGGTTTCATCATTTTCAT
                      ____________________________________________________________
consensus GTCACGTTGAGAAGGATGATGGCAAGACAGTGAGACACGATAAGGTTTCATCATTTTCAT