Contig 012833:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008C02Sequence572012833 (4)ref|XP_009784283.1|1e-13PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti243006907 (5)
JMFF014P14Sequence566012833 (4)ref|XP_009784283.1|7e-08PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti748006907 (5)ref|XP_009784283.1|3e-44PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti
JMFF037N06Sequence503012833 (4)ref|XP_009784283.1|7e-07PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti762006907 (5)ref|XP_009784284.1|2e-47PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Nicoti
JMFF043N21Sequence642012833 (4)ref|XP_009784283.1|7e-27PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti619006907 (5)ref|XP_009784283.1|1e-32PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF043N21+ TTCATCAAGGATTTCTGGGTCTCCAGAATTAGGCTTCCTTAGAGGAA
                      ____________________________________________________________
consensus TTCATCAAGGATTTCTGGGTCTCCAGAATTAGGCTTCCTTAGAGGAA
 
. : . : . : . : . : . :
JMFF043N21+ GAGTGATAGGATAGTAGCTATTCTTGTAATCCCAAGGTTCTCGATACTCTCTTTTTTTCT
JMFF014P14+ AAGGTTCTCGATACTCTCTTTTTTTCT
JMFF008C02+ AAGGTTCTCGATACTCTCTTTTTTTCT
                      ____________________________________________________________
consensus GAGTGATAGGATAGTAGCTATTCTTGTAATCCCAAGGTTCTCGATACTCTCTTTTTTTCT
 
. : . : . : . : . : . :
JMFF043N21+ TCTTTATGCTTTCAGCTTTCGCCAAACTATCTTCATCTACATCAACATTAGTATTTGAAG
JMFF014P14+ TCTTTATGCTTTCAGCTTTCGCCAAACTATCTTCATCTACATCAACATTAGTATTTGAAG
JMFF037N06+ TCTACATCAACATTAGTATTTGAAG
JMFF008C02+ TCTTTATGCTTTCAGCTTTCGCCAAACTATCTTCATCTACATCAACATTAGTATTTGAAG
                      ____________________________________________________________
consensus TCTTTATGCTTTCAGCTTTCGCCAAACTATCTTCATCTACATCAACATTAGTATTTGAAG
 
. : . : . : . : . : . :
JMFF043N21+ GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAAT-CCTGTACTATCA
JMFF014P14+ GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAATCCCTGTACTATCA
JMFF037N06+ GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAAT-CCTGTACTATCA
JMFF008C02+ GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAAT-CCTGTACTATCA
                      ____________________________________________________________
consensus GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAAT-CCTGTACTATCA
 
. : . : . : . : . : . :
JMFF043N21+ GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
JMFF014P14+ GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
JMFF037N06+ GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
JMFF008C02+ GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
                      ____________________________________________________________
consensus GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
 
. : . : . : . : . : . :
JMFF043N21+ GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
JMFF014P14+ GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
JMFF037N06+ GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
JMFF008C02+ GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
                      ____________________________________________________________
consensus GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
 
. : . : . : . : . : . :
JMFF043N21+ TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
JMFF014P14+ TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
JMFF037N06+ TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
JMFF008C02+ TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
                      ____________________________________________________________
consensus TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
 
. : . : . : . : . : . :
JMFF043N21+ GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
JMFF014P14+ GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
JMFF037N06+ GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
JMFF008C02+ GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
                      ____________________________________________________________
consensus GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
 
. : . : . : . : . : . :
JMFF043N21+ CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
JMFF014P14+ CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
JMFF037N06+ CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
JMFF008C02+ CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
                      ____________________________________________________________
consensus CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
 
. : . : . : . : . : . :
JMFF043N21+ AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
JMFF014P14+ AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
JMFF037N06+ AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
JMFF008C02+ AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
                      ____________________________________________________________
consensus AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
 
. : . : . : . : . : . :
JMFF043N21+ CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGA
JMFF014P14+ CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGA
JMFF037N06+ CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGA
JMFF008C02+ CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGAAGAC
                      ____________________________________________________________
consensus CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGAAGAC