Contig 012825:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005K21Sequence485012825 (2)ref|XP_009619541.1|6e-67PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780709007010 (2)ref|XP_009619542.1|5e-84PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780
JMSF001L10Sequence513012825 (2)ref|XP_010316837.1|2e-62PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780666007010 (2)ref|XP_009619542.1|4e-71PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780

Alignment

This contig is upended


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JMSF001L10+                                 TTCCTGCAATACTATAGCCTTTGGCCAAAATGTTGGGA
                      ____________________________________________________________
consensus                                   TTCCTGCAATACTATAGCCTTTGGCCAAAATGTTGGGA
 
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JMSF001L10+           GTAGGGCCACTCAGGTTATTGAACGACAAATCCAAGAATGAAAGACCTGAAAGATTTGCC
JMFF005K21+                                                                  TTGCC
                      ____________________________________________________________
consensus             GTAGGGCCACTCAGGTTATTGAACGACAAATCCAAGAATGAAAGACCTGAAAGATTTGCC
 
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JMSF001L10+           ACGGGTTTAGGAATGCGTCCCGACAATCTGTTTCTGTTAAGCCTCAAGTAACTTAAACGG
JMFF005K21+           ACGGGTTTAGGAATGCGTCCCGACAATCTGTTTCTGTTAAGCCTCAAGTAACTTAAACGG
                      ____________________________________________________________
consensus             ACGGGTTTAGGAATGCGTCCCGACAATCTGTTTCTGTTAAGCCTCAAGTAACTTAAACGG
 
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JMSF001L10+           GTCAGGGAACCCAAAGAGCCGGGGATTTCACCATCAAACAGATTACCAGACAGGTCAAGT
JMFF005K21+           GTCAGGGAACCCAAAGAGCCGGGGATTTCACCATCAAACAGATTACCAGACAGGTCAAGT
                      ____________________________________________________________
consensus             GTCAGGGAACCCAAAGAGCCGGGGATTTCACCATCAAACAGATTACCAGACAGGTCAAGT
 
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JMSF001L10+           GTCTGCAATTCCGCGAGTTTTCCAATCTCGGCAGGGATTGGACCAGATAACCGGTTATTC
JMFF005K21+           GTCTGCAATTCCGCGAGTTTTCCAATCTCGGCAGGGATTGGACCAGATAACCGGTTATTC
                      ____________________________________________________________
consensus             GTCTGCAATTCCGCGAGTTTTCCAATCTCGGCAGGGATTGGACCAGATAACCGGTTATTC
 
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JMSF001L10+           TGCAATAACATTGTTCTAAGGTGAGTTAAATTTCCAATGCTTGGTGAAAGCAATCCAGAT
JMFF005K21+           TGCAATAACATTGTTCTAAGGTGAGTTAAATTTCCAATGCTTGGTGAAAGCAATCCAGAT
                      ____________________________________________________________
consensus             TGCAATAACATTGTTCTAAGGTGAGTTAAATTTCCAATGCTTGGTGAAAGCAATCCAGAT
 
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JMSF001L10+           AGACCCATACTAGCCATTTCA------------AGAGAAATGACAAAGCCTTCTTGTGAG
JMFF005K21+           AGACCCATACTAGCCATTTCAAGATATACATACAGAGAAATGACAAAGCCTTCTTGTGAG
                      ____________________________________________________________
consensus             AGACCCATACTAGCCATTTCAAGATATACATACAGAGAAATGACAAAGCCTTCTTGTGAG
 
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JMSF001L10+           CAACCAACCATGTTCCATGTACAAGGATCAACAGAGTTTATATCCCATCCATCTAAAACA
JMFF005K21+           CAACCAACCATGTTCCATGTACAAGGATCAACAGAGTTTATATCCCATCCATCTAAAACA
                      ____________________________________________________________
consensus             CAACCAACCATGTTCCATGTACAAGGATCAACAGAGTTTATATCCCATCCATCTAAAACA
 
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JMSF001L10+           TGGAATGTATCTCTCATTTTACTCTTCACAGACATCAATGAAGCCACT            
JMFF005K21+           TGGAATGTATCTCTCATTTTACTCTTCACAGACATCAATGAAGCCACTTCATAGTTGACA
                      ____________________________________________________________
consensus             TGGAATGTATCTCTCATTTTACTCTTCACAGACATCAATGAAGCCACTTCATAGTTGACA
 
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JMFF005K21+           CCCTTTGGGGAGAGAAGGCTGTCAGAGGCTTGAGTTACTCCAAACCAGAAGAAAATCAGC
                      ____________________________________________________________
consensus             CCCTTTGGGGAGAGAAGGCTGTCAGAGGCTTGAGTTACTCCAAACCAGAAGAAAATCAGC