| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005A06 | Sequence | 416 | 012818 (11) | ref|XP_009774228.1| | 1e-50 | PREDICTED: ATP-citrate synthase alpha chain protein 2 [Nicotiana sylvestris] | 773 | 012818 (11) | gb|KDP23347.1| | 2e-145 | hypothetical protein JCGZ_23180 [Jatropha curcas] |
| JMFF006C08 | Sequence | 518 | 012818 (11) | ref|XP_009629184.1| | 1e-70 | PREDICTED: ATP-citrate synthase alpha chain protein 2 [Nicotiana tomentosiformi | 773 | 012818 (11) | gb|KDP23347.1| | 1e-144 | hypothetical protein JCGZ_23180 [Jatropha curcas] |
| JMFF011B14 | Sequence | 470 | 012818 (11) | ref|XP_009774228.1| | 4e-82 | PREDICTED: ATP-citrate synthase alpha chain protein 2 [Nicotiana sylvestris] | 745 | 012818 (11) | ref|XP_010270942.1| | 9e-106 | PREDICTED: ATP-citrate synthase alpha chain protein 2 [Nelumbo nucifera] |
| JMFF043N14 | Sequence | 647 | 012818 (11) | ref|XP_009774228.1| | 3e-106 | PREDICTED: ATP-citrate synthase alpha chain protein 2 [Nicotiana sylvestris] | 535 | 012818 (11) | emb|CDY31089.1| | 4e-38 | BnaA08g26390D [Brassica napus] |
| JMFF048F01 | Sequence | 354 | 012818 (11) | ref|XP_009774228.1| | 4e-58 | PREDICTED: ATP-citrate synthase alpha chain protein 2 [Nicotiana sylvestris] | |||||
| JMSF034I01 | Sequence | 719 | 012818 (11) | ref|XP_009629184.1| | 7e-154 | PREDICTED: ATP-citrate synthase alpha chain protein 2 [Nicotiana tomentosiformi | 649 | 012818 (11) | ref|XP_010270942.1| | 4e-110 | PREDICTED: ATP-citrate synthase alpha chain protein 2 [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
rJMFF011B14- ACCCTAATTGCTTCCGCGAA
____________________________________________________________
consensus ACCCTAATTGCTTCCGCGAA
. : . : . : . : . : . :
rJMFF011B14- CATTCAAAGATAACGCAAATTTCACAACAAATATAAAATATCCGTAAAATTTCAGAAAAC
____________________________________________________________
consensus CATTCAAAGATAACGCAAATTTCACAACAAATATAAAATATCCGTAAAATTTCAGAAAAC
. : . : . : . : . : . :
rJMFF043N14- CCACAAAAATATGAGGCTTCCCCCTTATTGCAAAGTTTTTCATAAATTCAGAGAAGG
rJMFF011B14- CATCCACAGAAATATGAGGCTTCCCCCTTATTGCAAAGTTTTTCATAAATTCAGCAAATG
rJMFF006C08- AAGTTTTTCATAAATTCAGCAAATG
rJMFF005A06- AAGTTTTTCATAAATTCAGCAAATG
____________________________________________________________
consensus CATCCACAGAAATATGAGGCTTCCCCCTTATTGCAAAGTTTTTCATAAATTCAGCAAATG
. : . : . : . : . : . :
rJMFF043N14- CAGTTTCCTTTCAAGCAGGGAAAAAAAGTCTAAAAAAAGGGGATAAAACCCCAAAGCTTT
rJMFF011B14- CAGTTTCCTTTCAAGCATGGGAAGAGAGTCTGAAAAGAGTGGATGAAACACCAGAGCATT
rJMFF006C08- CAGTTTCCTTTCAAGCATGGGAAGAGAGTCTGAAAAGAGTGGATGAAACACCAGAGCATT
rJMSF034I01- AGCATGGGAAGAGAGTCTGAAAAGAGTGGATGAAACACCAGAGCATT
rJMFF005A06- CAGTTTCCTTTCAAGCATGGGAAGAGAGTCTGAAAAGAGTGGATGAAACACCAGAGCATT
____________________________________________________________
consensus CAGTTTCCTTTCAAGCATGGGAAGAGAGTCTGAAAAGAGTGGATGAAACACCAGAGCATT
. : . : . : . : . : . :
rJMFF043N14- GCATGATTTTAAAGGGGGAACTTTTATATCTATGTTTAAAACATAACCCAATCAATACCC
rJMFF011B14- GCATGAATTTAAAAGGGGAACTTTTATATCTATGCTTAAGACATAACGCAATCAATAGCC
rJMFF006C08- GCATGAATTTAAAAGGGGAACTTTTATATCTATGCTTAAGACATAACGCAATCAATAGCC
rJMSF034I01- GCATGAATTTAAAAGGGGAACTTTTATATCTATGCTTAAGACATAACGCAATCAATAGCC
rJMFF005A06- GCATGAATTTAAAAGGGGAACTTTTATATCTATGCTTAAGACATAACGCAATCAATAGCC
____________________________________________________________
consensus GCATGAATTTAAAAGGGGAACTTTTATATCTATGCTTAAGACATAACGCAATCAATAGCC
. : . : . : . : . : . :
rJMFF043N14- CGTTTGCAAATGCCAGTCTTTGAACCCTCAGGCCCATAAACCTCTAGGGAAACTCCCAAT
rJMFF011B14- CGTTTGCAAATGCCAGTCATTGTAGCCTCAGGTCCATAAACCTCTAGGGGAACTCCCAAC
rJMFF006C08- CGTTTGCAAATGCCAGTCATTGTAGCCTCAGGTCCATAAACCTCTAGGGGAACTCCCAAC
rJMSF034I01- CGTTTGCAAATGCCAGTCATTGTAGCCTCAGGTCCATAAACCTCTAGGGGAACTCCCAAC
rJMFF005A06- CGTTTGCAAATGCCAGTCATTGTAGCCTCAGGTCCATAAACCTCTAGGGGAACTCCCAAC
____________________________________________________________
consensus CGTTTGCAAATGCCAGTCATTGTAGCCTCAGGTCCATAAACCTCTAGGGGAACTCCCAAC
. : . : . : . : . : . :
rJMFF043N14- TCTTCACCCAAGGCACGCTTTTTTGCCAAACCTGTTTGATAATTAGGGCCCCCTCTTCAA
rJMFF011B14- TCTTCACCCAATGCACGCATCTTTGCCAAACCTGTTTGATAATTAGGGCCACCTCTTCGA
rJMFF006C08- TCTTCACCCAATGCACGCATCTTTGCCAAACCTGTTTGATAATTAGGGCCACCTCTTCGA
rJMSF034I01- TCTTCACCCAATGCACGCATCTTTGCCAAACCTGTTTGATAATTAGGGCCACCTCTTCGA
rJMFF005A06- TCTTCACCCAATGCACGCATCTTTGCCAAACCTGTTTGATAATTAGGGCCACCTCTTCGA
____________________________________________________________
consensus TCTTCACCCAATGCACGCATCTTTGCCAAACCTGTTTGATAATTAGGGCCACCTCTTCGA
. : . : . : . : . : . :
rJMFF043N14- ACATAAATGTTCTTTCAACCAGTTTTTAACTGGAATCCCTTCCCCCAAAAAGCCCGGATA
rJMFF011B14- ACATAAATGTTCATTCTAGCAGCTTTTAACTTGGATTCCTTCTCCCTAAGAGCCCGGATA
rJMFF006C08- ACATAAATGTTCATTCTAGCAGCTTTTAACTTGGATTCCTTCTCCCTAAGAGCCCGGATA
rJMSF034I01- ACATAAATGTTCATTCTAGCAGCTTTTAACTTGGATTCCTTCTCCCTAAGAGCCCGGATA
rJMFF005A06- ACATAAATGTTCATTCTAGCAGCTTTTAACTTGGATTCCTTCTCCCTAAGAGCCCGGATA
____________________________________________________________
consensus ACATAAATGTTCATTCTAGCAGCTTTTAACTTGGATTCCTTCTCCCTAAGAGCCCGGATA
. : . : . : . : . : . :
rJMFF043N14- ATTCCTTTGAAGGTACCAGCACCTTCAGTAAAATTACCAAGGCCCCCTCCAATAAGGAAA
rJMFF011B14- ATTCCATTGAAGGTAGCAGCAACATCAGTAAAATTAGCAATGCCACCTCCAATAATGAGA
rJMFF006C08- ATTCCATTGAAGGTAGCAGCAACATCAGTAAAATTAGCAATGCCACCTCCAATAATGAGA
rJMSF034I01- ATTCCATTGAAGGTAGCAGCAACATCAGTAAAATTAGCAATGCCACCTCCAATAATGAGA
rJMFF005A06- ATTCCATTGAAGGTAGCAGCAACATCAGTAAAATTAGCAATGCCACCTCCAATAATGAGA
____________________________________________________________
consensus ATTCCATTGAAGGTAGCAGCAACATCAGTAAAATTAGCAATGCCACCTCCAATAATGAGA
. : . : . : . : . : . :
rJMFF043N14- GCTCTCTTACGGCCATCTGGATCAGCTGGGGCCCAATCAA
rJMFF011B14- GCTCTCTTACGGCCATCTGGATCAGCTGTGGCACAATCAAGAACTACACGAGCATATTGT
rJMFF006C08- GCTCTCTTACGGCCATCTGGATCAGCTGTGGCACAATCAAGAACTACACGAGCATATTGT
rJMSF034I01- GCTCTCTTACGGCCATCTGGATCAGCTGTGGCACAATCAAGAACTACACGAGCATATTGT
rJMFF005A06- GCTCTCTTACGGCCATCTGGATCAGCTGTGGCACAATCAAGAACTACACGAGCATATTGT
____________________________________________________________
consensus GCTCTCTTACGGCCATCTGGATCAGCTGTGGCACAATCAAGAACTACACGAGCATATTGT
. : . : . : . : . : . :
rJMFF011B14- AAAACCTCCTCTTCATTTGGAGCTCCACTATATTCTGCATAGTTACCAAGCTCAGATGCA
rJMFF006C08- AAAACCTCCTCTTCATTTGGAGCTCCACTATATTCTGCATAGTTACCAAGCTCAGATGCA
rJMSF034I01- AAAACCTCCTCTTCATTTGGAGCTCCACTATATTCTGCATAGTTACCAAGCTCAGATGCA
rJMFF005A06- AAAACCTCCTCTTCATTTGGAGCTCCACTATATTCTGCATAGTTACCAAGCTCAGATGCA
____________________________________________________________
consensus AAAACCTCCTCTTCATTTGGAGCTCCACTATATTCTGCATAGTTACCAAGCTCAGATGCA
. : . : . : . : . : . :
rJMFF011B14- TAGCCTAAATCTCCGACTGTATCAGCATATATTACACTTGCTCCACCTCCAGCAACCATT
rJMFF006C08- TAGCCTAAATCTCCGACTGTATCAGCATATATTACACTTGCTCCACCTCCAGCAACCATT
rJMSF034I01- TAGCCTAAATCTCCGACTGTATCAGCATATATTACACTTGCTCCACCTCCAGCAACCATT
rJMFF005A06- TAGCCTAAATCTCCGACTGTATCAGCATATATTACACTTGCTCCACCTCCAGCAACCATT
____________________________________________________________
consensus TAGCCTAAATCTCCGACTGTATCAGCATATATTACACTTGCTCCACCTCCAGCAACCATT
. : . : . : . : . : . :
rJMFF011B14- GTCCAAATTCGACCTTTGGGATTCAAGACAGTAAACTTCNAAGA
rJMFF006C08- GTCCAAATTCGACCTTTGGGATTCAAGACAGTAAACTTCAAAGAGGCACTGGTTTTTTCA
rJMSF034I01- GTCCAAATTCGACCTTTGGGATTCAAGACAGTAAACTTCAAAGAGGCACTGG--TTTTCA
rJMFF005A06- GTCCAAATTCGACCTTTGGGATTCAAGACAGTAAACTTCAAAGAGGCACTGGTTTTTTCA
____________________________________________________________
consensus GTCCAAATTCGACCTTTGGGATTCAAGACAGTAAACTTCAAAGAGGCACTGGTTTTTTCA
. : . : . : . : . : . :
rJMFF006C08- TCCAAGGAATGAATAAAACTTTCTGTTGGGCTCAAAACTCTTCCAAAAGGCAGAGGGAAC
rJMSF034I01- TCCAAGGAATGAATAAAACTTTCTGTTGGGCTCAAAACTCTTCCAAAAGGCAGA
rJMFF005A06- TCCAAGGAATGAATAAAACTTTCTGTTGGGCTCAAAACTCTTCCAAAAGGCAGAGGGAAC
____________________________________________________________
consensus TCCAAGGAATGAATAAAACTTTCTGTTGGGCTCAAAACTCTTCCAAAAGGCAGAGGGAAC
. : . : . : . : . : . :
rJMFF006C08- TCAATATTGCCCCACTTCTGAAAGTTTTTAAAGGCAGCTGTGTCATCTAACTCTCCTCTC
rJMFF005A06- TCAATATTGCCCCACTTCTGAAAGTTTTTAAAGGCAGCTGTGTCATCTAACTCTCCTCTC
JMSF034I01+ TTCTGAAAGTTTTTAAAGGCAGCTGTGTCATCTAACTCTCCTCTC
____________________________________________________________
consensus TCAATATTGCCCCACTTCTGAAAGTTTTTAAAGGCAGCTGTGTCATCTAACTCTCCTCTC
. : . : . : . : . : . :
rJMFF006C08- ATGTCCA
rJMFF005A06- ATGTCCA
JMSF034I01+ ATGTCCAGGGGATATGGTTCACCATTGACAAGCGTAAAGGGATTCATCTCAAGAAAACTG
____________________________________________________________
consensus ATGTCCAGGGGATATGGTTCACCATTGACAAGCGTAAAGGGATTCATCTCAAGAAAACTG
. : . : . : . : . : . :
JMSF034I01+ AAGTCCAGGTCTTGAAAAACAGAAAACACACCCAATATAAAATTGCCAATTTTCCCCCGT
____________________________________________________________
consensus AAGTCCAGGTCTTGAAAAACAGAAAACACACCCAATATAAAATTGCCAATTTTCCCCCGT
. : . : . : . : . : . :
JMSF034I01+ ACCTCCAAGGGAAGAGTAGCAATCAGTGGTGCGCACACCTCCAGGGTCATAGGCTTTTCA
JMFF043N14+ AGGGAAGAGTAGCAATCAGTGGTGCGCACACCTCCAGGGTCATAGGCTTTCAG
____________________________________________________________
consensus ACCTCCAAGGGAAGAGTAGCAATCAGTGGTGCGCACACCTCCAGGGTCATAGGCTTTTCG
. : . : . : . : . : . :
JMSF034I01+ GTTGGAAGGAATACTGTCTTGACCTTGTCCCAGTTTTCTTCAATTTCAATGCCTCCACAT
JMFF006C08+ TGTCCCAGTTTTCTTCAATTTCAATGCCTCCACAT
JMFF043N14+ NTTGGAAGGAATACTGTCTGACCCTTGTCCCAGTTTTCTTCAATTTCAATGCCTCCACAT
____________________________________________________________
consensus GTTGGAAGGAATACTGTCTTGCCCTTGTCCCAGTTTTCTTCAATTTCAATGCCTCCACAT
. : . : . : . : . : . :
JMFF011B14+ TGAGAAGCTAATGGTACACCCTAACCTTTCAGATACTATTGAAAGATAATACTCCTCG
JMSF034I01+ TCTGAGAAGCTAATGGTACACCCTAACCTTTCAGATACTATTGAAAGATAATACTCCTCG
JMFF006C08+ TCTGAGAAGCTAATGGTACACCCTAACCTTTCAGATACTATTGAAAGATAATACTCCTCG
JMFF043N14+ TCTGAGAAGCTAATGGTACACCCTAACCTTTCAGATACTATGNAAAGATAATACTCCTCG
____________________________________________________________
consensus TCTGAGAAGCTAATGGTACACCCTAACCTTTCAGATACTATTGAAAGATAATACTCCTCG
. : . : . : . : . : . :
JMFF011B14+ GCATGGGGAACAAATGGTTCAACAATGAAGGTTGTAATAGGTGCTTTGCAGCCACCCATC
JMSF034I01+ GCATGGGGAACAAATGGTTCAACAATGAAGGTTGTAATAGGTGCTTTGCAGCCACCCATC
JMFF006C08+ GCATGGGGAACAAATGGTTCAACAATGAAGGTTGTAATAGGTGCTTTGCAGCCACCCATC
JMFF048F01+ TAGGTGCTTTGCAGCCACCCATC
JMFF043N14+ GCATGGGGAACAAATGGTTCAACAATGAAGGTTGTAATAGGTGCTTTGCAGCCACCCATC
____________________________________________________________
consensus GCATGGGGAACAAATGGTTCAACAATGAAGGTTGTAATAGGTGCTTTGCAGCCACCCATC
. : . : . : . : . : . :
JMFF011B14+ TCAACCTCCACA-CCAAGACGTGCTTTGACAAATTCAGCAACTTCTGCTAGATCCAACTT
JMSF034I01+ TCAACCTCCACA-CCAAGACGTGCTTTGACAAATTCAGCAACTTCTGCTAGATCCAACTT
JMFF006C08+ TCAACCTCCACACCCAAGACGTGCTTTGACAAATTCAGCAACTTCTGCTAGATCCAACTT
JMFF048F01+ TCAACCTCCACA-CCAAGACGTGCTTTGACAAATTCAGCAACTTCTGCTAGATCCAACTT
JMFF043N14+ TCAACCTCCACA-CCAAGACGTGCTTTGACAAATTCAGCAACTTCTGCTAGATCCAACTT
JMFF005A06+ ACCTCCACA-CCAAGACGTGCTTTGACAAATTCAGCAACTTCTGCTAGATCCAACTT
____________________________________________________________
consensus TCAACCTCCACA-CCAAGACGTGCTTTGACAAATTCAGCAACTTCTGCTAGATCCAACTT
. : . : . : . : . : . :
JMFF011B14+ CAAAGCCACCAAGCCACTCTTTCCACGCTTCCCAAACAACATGTCTGGTTTTACAACCAA
JMSF034I01+ CAAAGCCACCAAGCCACTCTTTCCACGCTTCCCAAACAACATGTCTGGTTTTACAACCAA
JMFF006C08+ CAAAGCCACCAAGCCACTCTTTCCACGCTTCCCAAACAACATGTCTGGTTTTACAACCAA
JMFF048F01+ CAAAGCCACCAAGCCACTCTTTCCACGCTTCCCAAACAACATGTCTGGTTTTACAACCAA
JMFF043N14+ CAAAGCCACCAAGCCACTCTTTCCACGCTTCCCAAACAACATGTCTGGTTTTACAACCAA
JMFF005A06+ CAAAGCCACCAAGCCACTCTTTCCACGCTTCCCAAACAACATGTCTGGTTTTACAACCAA
____________________________________________________________
consensus CAAAGCCACCAAGCCACTCTTTCCACGCTTCCCAAACAACATGTCTGGTTTTACAACCAA
. : . : . : . : . : . :
JMFF011B14+ TTTTGTGGACGAAAGCCATGGTTCTTTGTTTGTTAACTCAGCAAAATCCGTAGATTCTGT
JMSF034I01+ TTTTGTGGACGAAAGCCATGGTTCTTTGTTTGTTAACTCAGCAAAATCCGTAGATTCTGT
JMFF006C08+ TTTTGTGGACGAAAGCCATGGTTCTTTGTTTGTTAACTCAGCAAAATCCGTAGATTCTGT
JMFF048F01+ TTTTGTGGACGAAAGCCATGGTTCTTTGTTTGTTAACTCAGCAAAATCCGTAGATTCTGT
JMFF043N14+ TTTTGTGGACGAAAGCCATGGTTCTTTGTTTGTTAACTCAGCAAAATCCGTAGATTCTGT
JMFF005A06+ TTTTGTGGACGAAAGCCATGGTTCTTTGTTTGTTAACTCAGCAAAATCCGTAGATTCTGT
____________________________________________________________
consensus TTTTGTGGACGAAAGCCATGGTTCTTTGTTTGTTAACTCAGCAAAATCCGTAGATTCTGT
. : . : . : . : . : . :
JMFF011B14+ TACTTGAGCAGAGCAGATCTGTAGGTCGATGCCAGACAGACGCTTCAAATGCTCCTTCAG
JMSF034I01+ TACTTGAGCAGAGCAGATCTGTAGGTCGATGCCAGACAGACGCTTCAAATGCTCCTTCAG
JMFF006C08+ TACTTGAGCAGAGCAGATCTGTAGGTCGATGCCAGACAGACGCTTCAAATGCTCCTTCAG
JMFF048F01+ TACTTGAGCAGAGCAGATCTGTAGGTCGATGCCAGACAGACGCTTCAAATGCTCCTTCAG
JMFF043N14+ TACTTGAGCAGAGCAGATCTGTAGGTCGATGCCAGACAGACGCTTCAAATGCTCCTTCAG
JMFF005A06+ TACTTGAGCAGAGCAGATCTGTAGGTCGATGCCAGACAGACGCTTCAAATGCTCCTTCAG
____________________________________________________________
consensus TACTTGAGCAGAGCAGATCTGTAGGTCGATGCCAGACAGACGCTTCAAATGCTCCTTCAG
. : . : . : . : . : . :
JMFF011B14+ AACCCTCTTAGAATCGTACTCTCTGATCTTCTTCCTTGCCATATCACTACGCCC
JMSF034I01+ AACCCTCTTAGAATCGTACTCTCTGATCTTCTTCCTTGCCATATCACTACGCCCTGCCGC
JMFF006C08+ AACCCTCTTAGAATCGTACTCTCTGATCTTCTTCCTTGCCATATCACTACGCCCTGCCGC
JMFF048F01+ AACCCTCTTAGAATCGTACTCTCTGATCTTCTTCCTTGCCATATCACTACGCCCTGCCGC
JMFF043N14+ AACCCTCTTAGAATCGTACTCTCTGATCTTCTTCCTTGCCATATCACTACGCCCTGCCGC
JMFF005A06+ AACCCTCTTAGAATCGTACTCTCTGATCTTCTTCCTTGCCATATCACTACGCCCTGCCGC
____________________________________________________________
consensus AACCCTCTTAGAATCGTACTCTCTGATCTTCTTCCTTGCCATATCACTACGCCCTGCCGC
. : . : . : . : . : . :
JMSF034I01+ C
JMFF006C08+ C
JMFF043N14+ CAATCGAAAAGGAGAAAGAAACAGAAGGGCTTTGCTTTGCAGTCAAGTATAGGCTCACCC
JMFF005A06+ CAATCGAAAAGGAGAAAGAAACAGAAGGGCTTTGCTTTGCAGTCAAGTATAGGCTCACCC
____________________________________________________________
consensus CAATCGAAAAGGAGAAAGAAACAGAAGGGCTTTGCTTTGCAGTCAAGTATAGGCTCACCC
. : . : . : . : . : . :
JMFF043N14+ GACACCCAACTTCAACAACTCCACAGCTGAGACTCCTGAGAGTGAGAGAGAGTGA
JMFF005A06+ GACACCCAACTTCAACAACTCCACAGCTGAGACTCCTGAGAGTGAGAGAGAGTGAGAGAG
____________________________________________________________
consensus GACACCCAACTTCAACAACTCCACAGCTGAGACTCCTGAGAGTGAGAGAGAGTGAGAGAG